FC873754

Overview
NameFC873754
Unique NameFC873754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length834
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873754_ssr734 microsatellite FC873754_ssr734:734..755. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1144 contig Ccv1_Contig1144:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.139e-45
Identity = 97/201 (48.26%), Postives = 127/201 (63.18%), Query Frame = 1
Query:   43 VLAVDPDTLQDVCVADTSS-GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            VLA DPD LQD CVAD     V VNG  CK  +    D  F + LAK G  +   GS VT  +V + PG NTLGVS++R+D+  GG NPPH HPRATE+  V++GEL VG + + D   KL S+ V+ GE ++ P+ L+HFQ N G   AS++ +FNSQ PG   +  TLF + PP+P  VLTKA +V  + +E +KSK A
Sbjct:   21 VLATDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTKALRVEARVVELLKSKFA 221          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.204e-44
Identity = 96/201 (47.76%), Postives = 130/201 (64.68%), Query Frame = 1
Query:   43 VLAVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            V   DP  LQD CVA D +SGV VNG  CKD   + A+DFF +GL   G   N VGS VT  NV+KIPGLNTLGVSL RID+  GG NPPHTHPRATE++ V+EG L VGF+++    ++L SK +  G+++VFP  ++HFQ N G   A   +   SQ PGT +IA  +F + P +   +L KAFQ+    ++ ++++ +
Sbjct:   22 VSCYDPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNVVKYLEARFS 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.573e-44
Identity = 97/208 (46.63%), Postives = 128/208 (61.54%), Query Frame = 1
Query:   22 IFSIIAGVLAVDPDTLQDVCVADTSS-GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            +  +   VLA DPD LQD CVAD     V VNG  CK  +    D  F + LAK G  +   GS VT  +V + PG NTLGVS++R+D+  GG NPPH HPRATE+  V++GEL VG + + D   KL S+ V+ GE ++ P+ L+HFQ N G   AS++ +FNSQ PG   +  TLF + PP+P  VLTKA +V    +E +KSK A
Sbjct:   14 VLLLAPAVLASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTKALRVEAGVVELLKSKFA 221          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.504e-44
Identity = 100/200 (50.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:   43 VLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVN-NSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            + A D D LQD CVAD  S V VNG ACK  A+   D+F F+  +A  G VN N  GS VT  +V + PG+NTLGVS++R+D+  GG NPPH HPRATE+  VL GEL VG I T D   +  SK V+ GE +V P+ L+HFQ N G   A+++ +FNSQ PG   +  TLF + PP+P  VL KA +V T  +E +KSK
Sbjct:   26 IRATDADPLQDFCVADLDSKVTVNGHACKP-ASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKSK 224          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.020e-43
Identity = 99/200 (49.50%), Postives = 128/200 (64.00%), Query Frame = 1
Query:   43 VLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVN-NSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            + A D D LQD CVAD +S V VNG ACK  A+   D+F F+  +A  G VN N  GS VT  +V + PG+NTLGVS++R+D+  GG NPPH HPRATE+  VL GEL VG I T D   +  SK V+ GE +V P+ L+HFQ N G   A+++ +FNSQ PG   +  TLF + PP+P  VL KA +V    +E +KSK
Sbjct:   24 IRATDADPLQDFCVADLNSEVTVNGHACKP-ASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSK 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.020e-43
Identity = 88/193 (45.60%), Postives = 121/193 (62.69%), Query Frame = 1
Query:   55 DPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            D   LQD+CVAD  +   V+GF CK +A++ +DDFF   + +    +N  G   T A V   PGLNTLG+S++R D   GGLNPPH+HPRA+E++ VL GE+ VGF + A++L SK V++ E++V P+ L HFQ N G   AS ++ F+SQ PG  +    LF   P +P  VL K F +G  E+  IKSK A
Sbjct:   30 DSPPLQDICVADLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGEDEVGAIKSKFA 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.332e-43
Identity = 99/200 (49.50%), Postives = 127/200 (63.50%), Query Frame = 1
Query:   43 VLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVN-NSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            + A D D LQD CVAD  S V VNG ACK  A+   D+F F+  +A  G VN N  GS VT  +V + PG+NTLGVS++R+D+  GG NPPH HPRATE+  VL GEL VG I T D   +  SK V+ GE +V P+ L+HFQ N G   A+++ +FNSQ PG   +  TLF + PP+P  VL KA +V    +E +KSK
Sbjct:   26 IRATDADPLQDFCVADLDSKVTVNGHACKP-ASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSK 224          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.060e-43
Identity = 95/216 (43.98%), Postives = 133/216 (61.57%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSG-VKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAP 636
            L +  +L+    + V   DP+ LQD CVA + +  V VNG  CKD  ++TA+DF ++GL       N +GS VT  +V KIPGLNTLGVSL+R+D+  GG NPPH HPRATE++ V +G+L VGF+S+    ++L  K +K+G+++VFP  L+HFQ N     A   + F SQ PGT  IA  +F + P +P  VL KAFQ+  K +  +     P
Sbjct:    9 LVTQVILLALATSFVSCYDPNPLQDFCVAASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVFGP 224          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.923e-42
Identity = 94/205 (45.85%), Postives = 125/205 (60.98%), Query Frame = 1
Query:   31 IIAGVLAVDPDTLQDVCVADTSS-GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            + + VL+ +P  LQD CVAD     V VNG  CK  +    D  F + LAK G  +   GS VT  NV + PG NTLGVS++R+D+  GG NPPH HPRATE+  V++GEL VG + + D   KL S+ V+ GE ++ P+ L+HFQ N G   AS++  FNSQ P    +  TLF + PP+P  VLTKA +V    +E +KSK A
Sbjct:   17 LASAVLSSNPHPLQDFCVADLDGKAVSVNGHMCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKSKFA 221          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.511e-42
Identity = 93/197 (47.21%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   55 DPDTLQDVCVADTSS-GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 633
            DPD LQD CVAD     V VNG  CK  +    D  F + L K G  +   GS VT  +V + PG NTLGVS++R+D+  GG NPPH HPRATE+  V++GEL VG + + D   KL S+ V+ GE +V P+ L+HFQ N G   A ++ +FNSQ PG   +  TLF + PP+P  VLTKA +V    +E +KSK A
Sbjct:    2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFA 198          
The following BLAST results are available for this feature:
BLAST of FC873754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GER2_WHEAT4.139e-4548.26Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]
GL17_ARATH1.204e-4447.76Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
OXO2_HORVU1.573e-4446.63Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL34_ORYSJ3.504e-4450.00Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL35_ORYSJ1.020e-4349.50Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL12_ORYSJ1.020e-4345.60Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL36_ORYSJ1.332e-4349.50Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL16_ARATH5.060e-4343.98Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GER3_WHEAT1.923e-4245.85Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
OXO1_HORVU2.511e-4247.21Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873754 ID=FC873754; Name=FC873754; organism=Citrus clementina; type=EST; length=834bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCCTACTTCATAGTTCATATGAAA
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