FC873754

Overview
NameFC873754
Unique NameFC873754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length834
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873754_ssr734 microsatellite FC873754_ssr734:734..755. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1144 contig Ccv1_Contig1144:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.283e-42
Identity = 97/198 (48.99%), Postives = 125/198 (63.13%), Query Frame = 1
Query:   49 AVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAG-LAKPGVVN-NSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            A DPD LQD CVAD  S V +NG+ CK +     D+F F+  LA  G VN N  GS VT  +V   PG+NTLGVS++RID+  GG NPPH HPRATE+  VL GEL VG I + D   +  S+ V+ GE +V P+ L+HFQ N G   A+++ +FNSQ PG   +  TLF + PP+P  VL KA +V    +E +KSK
Sbjct:   26 ANDPDPLQDFCVADLDSEVTLNGYPCKPTP-AAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSK 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.166e-39
Identity = 91/203 (44.83%), Postives = 121/203 (59.61%), Query Frame = 1
Query:   43 VLAVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPK 639
            V   DP  LQD CVA    +GV VNG  CKD   +T+DDFF +GL  PG  N  +GS V  AN   IPGLNTLGV ++RID+  GGL PPH HPRA+E+I V++G+L VGF+S+ D    L SK +  G+++V P  LV F  N G   A  I A  SQ PG  S+   +F + PP+   +L KAF +    +  ++   +P+
Sbjct:   22 VSCYDPSPLQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPAN---IPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPIDPKILAKAFALDINIVRYLRKVFSPQ 221          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.523e-39
Identity = 86/212 (40.57%), Postives = 131/212 (61.79%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKS 624
            L +  +L+    + V   DP  LQD CVA + ++GV VNG  CKD   +T +DF+ +GL  PG      G+  T  +VE++PGLNTLGV ++R D+  GGL+PPHTHPR +++  V++G+L VGF+S+ +    L +K +  G+++VFPK L+HF  N G+  A VISA  SQ PG   I   +F + P +   VL KAF +   +++ +++
Sbjct:    8 LLAKIILLALASSFVYCYDPSPLQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQA 219          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.394e-39
Identity = 84/220 (38.18%), Postives = 126/220 (57.27%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVA--DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST-----ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIA----------ATLFTATPPVPDNVLTKAFQVGTKEI 609
            +F+  +L+ + +    A DP  LQD CV     + G+ VNG  CKD   +  DDF F GL  P   +N++G   T      +PGLNTLG+S++R+D+   GLNPPHTHPRATE+  VLEG   VGF+++      +KL +K + KG+++VFP+ L+HFQ N G+ P   IS  +SQ PG  +IA            +F   P +   + +  F++G++ +
Sbjct:    6 MFAFVVLLATTLYQAYATDPTQLQDFCVGVNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFGPEHLSQLMFLLRPSISMRIWSSFFRIGSQVV 225          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.789e-39
Identity = 86/217 (39.63%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   16 LLIFSIIAGVLAV--DPDTLQDVCVADTSSGVKVN-----GFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEA-GGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            LL+ +++   +A   DPD +QD CV D   G  V       + C+  AN+TA DF F+G+   G  +   G    +    + PGL+TLG+S +R D  A GG+NPPH HPRATE   VL G +  GF+ +  +L +K +++GE+ VFP+A+VHFQ N GD PA+V  AFNS+ PG   I AT+F +   + + VL +AF +   E+ +++ +  P K
Sbjct:    9 LLLLAVLLPAMAARGDPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAFGLTPAELRRLEKRFGPPK 223          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.875e-39
Identity = 86/215 (40.00%), Postives = 134/215 (62.33%), Query Frame = 1
Query:   16 LLIFSIIAG-----VLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSL-----VTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST--ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKS 624
            LL+ ++ AG     V+A DP+ LQD CVAD +S V+VNG  CKD A +TADDFFF+G+ +P        +       TA +V+ IPGLNTLG S +R+D   GG+ PPH HPRA+E   VL G +  GF+++    ++++K +++G+++  P+ LVHF  NNG +PA++ ++ +SQ PG   +A  L  A  P+P +++ K        ++KI++
Sbjct:   12 LLLVTLAAGHGVVVVVAFDPNPLQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGRGATASRRYGFTARSVD-IPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAA--PLPVDLVAKTLLTDEATVDKIRA 223          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.875e-39
Identity = 85/208 (40.87%), Postives = 128/208 (61.54%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVA-DTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIE 612
            L +  +L+    + V   +P  LQD CVA + ++GV VNG  CKD   +TA+DF+ +GL  PG  +   G  +T  +V+++PGLNTLGV ++RID+  GGL PPHTHPR +E+  V++G+L VGF+S+ +    L +K +  G+++VFPK L+ F  N G   A VI+A  SQ PG   I   +F + P +   VL KAF +   +++
Sbjct:    8 LLAKIILLALASSFVYCYEPSPLQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAFALDFNKVK 215          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.684e-38
Identity = 88/211 (41.71%), Postives = 125/211 (59.24%), Query Frame = 1
Query:   19 LIFSIIAGVLA------VDPDTLQDVCVADTSSG-VKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD---KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIK 621
            L+  II  VLA       DP+ LQD CVA   +  V VNG  CKD   +TA+DFF++GL  PG  +N +G+ VT  +V +IPGLNTLG++++R+D+  GG  PPH HPRA+++I VL+G+L VGF+S+ D    L SK +  G+++ FP  LV F  N G   A  I    SQ PG   I   +F + P +   +L KAF +    +  ++
Sbjct:    8 LVAKIILLVLASTFVHCYDPNPLQDYCVATNGTNRVFVNGKFCKDPKLVTANDFFYSGLNIPGNTSNRLGASVTDVDVRRIPGLNTLGIAIARLDFAPGGQLPPHIHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGSNPLIDPKLLAKAFALDVNIVRHVQ 218          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.883e-35
Identity = 81/212 (38.21%), Postives = 125/212 (58.96%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVAD-TSSGVKVNGFA----CKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAP 636
            LL F++    LA DPD +QD C+    +S    + F+    CK+S+ +T +DF F+GL   G    + G        E  PGLNTLG+S  R D + G +NPPH HPRATE+  +++G +  GF+ + +K+ +K +++GE+ V+PK LVHFQ N GD  A+++   NSQ PG Q I + +F +   + + +L KAF +  K+I  +K +  P
Sbjct:   14 LLCFNVCF-TLASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLKTAGNFTET-GFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGS--GINEELLMKAFGLSLKQIGTLKKRFDP 221          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.517e-34
Identity = 77/203 (37.93%), Postives = 120/203 (59.11%), Query Frame = 1
Query:   22 IFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 630
            IF I++   ++   ++QD CVAD       +G++CK+   +T +DF F+GL K G  +N + + VT A      GLN L VSL+R+D   GG+ P HTHP A+E++ V++G +  GFIS+A+K+  KT+ +G+  VFP+ L+HFQ N+G  PA    AF S  PG Q +   LF     +P  ++     +  +E++K+K  L
Sbjct:    7 IFFILSLFSSISFASVQDFCVADPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALF--ANDLPSELVEATTFLSDEEVKKLKGVL 207          
The following BLAST results are available for this feature:
BLAST of FC873754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL33_ORYSJ4.283e-4248.99Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL13_ARATH1.166e-3944.83Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL14_ARATH1.523e-3940.57Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GLP1_MESCR3.394e-3938.18Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL24_ORYSJ5.789e-3939.63Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL51_ORYSJ9.875e-3940.00Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL15_ARATH9.875e-3940.87Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL12_ARATH1.684e-3841.71Putative germin-like protein subfamily 1 member 2 ... [more]
GL32_ARATH3.883e-3538.21Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GLP1_SINAL2.517e-3437.93Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873754 ID=FC873754; Name=FC873754; organism=Citrus clementina; type=EST; length=834bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCCTACTTCATAGTTCATATGAAA
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