FC873754

Overview
NameFC873754
Unique NameFC873754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length834
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873754_ssr734 microsatellite FC873754_ssr734:734..755. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1144 contig Ccv1_Contig1144:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.517e-34
Identity = 77/203 (37.93%), Postives = 118/203 (58.13%), Query Frame = 1
Query:   22 IFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 630
            IF II+ +  +   ++QD CVAD       +G++CK+   +T +DF F GL   G  +N + + VT A      G+N LGVSL+R+D   GG+ P HTHP A+E++ V++G +  GFIS+A+K+  KT+ +G+  VFP+ L+HFQ N+G  PA    AF S  PG Q +   LF     +P  ++     +   E++K+K  L
Sbjct:    7 IFFIISLISTISFASVQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALF--ANDLPSELVEATTFLSDAEVKKLKGVL 207          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.293e-34
Identity = 81/214 (37.85%), Postives = 124/214 (57.94%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVADTSSGVK-----VNGFACKDSANITADDFFFAGLAK---PGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 630
            LL  ++ A +   DPD L D CVADT++        +NG AC D A   AD F  + L++   P        + +T+     +PG N  G++++RID   GG+ PPH+HPRA+E   VL G + VGF  T+ +L ++ ++ GE +VFP+A+VHF  N +   PA V+S  NSQ PG Q +  + F   P +PD VL KAF++  +++++I+  L
Sbjct:   10 LLSLALFAVLCRCDPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQKHL 222          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 9.564e-34
Identity = 74/210 (35.24%), Postives = 121/210 (57.62%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVADTSSG---VKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSL-VTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN-NGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 630
            LL  +++ G +  DPD LQD CV+   S    + +NG  CKD    +  DF  + L++PG        + VT      +PGLNT+G++++R+D+   G+ PPH HPRA+E+   L+G L VGF+ T+ ++ ++ +  GE +VFPK L+HF  N +    A  +S  +SQ PGTQ ++ + F + PP    VL  A+ +  +++ +I+  L
Sbjct:    6 LLTLTLLMGRVKSDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDINGQDVARIRKSL 215          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.631e-33
Identity = 78/211 (36.97%), Postives = 125/211 (59.24%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKV-NGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            L ST +L+ ++     A+     QD CVA+   G    +G+ C+ +A +TA DF+   LA+PG++     + + +A V++ P +N LG+S SR+D   GG+ P HTHP  +E+++VL+G L  GFIS++D K+  K V KG ++VFP+ L+HFQ N GD  A   +A++S  PG Q +   LF     +P + + K   +   E+ ++KSK
Sbjct:   10 LLSTMILLSAVSTTTTALT----QDFCVANLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANN--LPTSYVVKGTFLAEAEVRRLKSK 214          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.631e-33
Identity = 78/210 (37.14%), Postives = 124/210 (59.05%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 630
            LF+ +LL+ S  A V        QD CVAD ++     GF+CK  A++  +DF F+GL   G  +N + + VT A V + PG+N LG+S++R+D   GG+ P HTHP A+E++ V +G +  GF+++ +    +T++KG+I VFP+ L+HFQ N G+ PA   ++F S  PG Q +   LF     +P  V+ +   +   +I+K+K  L
Sbjct:   11 LFTFFLLLSSSNAAV--------QDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALF--KNDLPTEVIAQTTFLDAAQIKKLKGVL 210          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.077e-32
Identity = 77/209 (36.84%), Postives = 120/209 (57.42%), Query Frame = 1
Query:    4 FSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 630
            F+ +LL+ S  A V        QD CVAD  +     G++CK  A +T +DF ++GL   G   N + + VT A   + PG+N LG+SL+R+D   GG+ P HTHP A+E++ V++G +  GF+++ +    KT+KKG+I VFP+ L+HFQ N G  PA    +F+S  PG Q +   LF     +P  ++ +   +   +I+K+K  L
Sbjct:    7 FTFFLLLSSSHASV--------QDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALF--KNDLPTELIAQTTFLDAAQIKKLKGVL 205          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.018e-32
Identity = 78/208 (37.50%), Postives = 116/208 (55.77%), Query Frame = 1
Query:   34 IAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSV-----GSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            +A V+A DPD L D  +            A  ++ NIT D F F G   P  +N S+        VT A + + P LN   VS + + Y    LNPPHTHPR+ E++ +++G L VGF+ T +KL ++ +  G+++VFPK +VHFQ N+G++PA  +SAF S   G  S+  T+F     + D VL K+F+     I+K+K+ L P K
Sbjct:   18 VALVMAGDPDILTDYVIP-----------AGSNAENITGDFFTFTGFRNPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSFKTDVPTIQKLKAGLTPPK 212          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.854e-32
Identity = 74/217 (34.10%), Postives = 115/217 (53.00%), Query Frame = 1
Query:    4 FSTYLLIFSIIAGVLAVDP---------DTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            F + +LIF  +   L  +P         +  QD CVAD  +    +G+ CK  + +T++DFF++GL  P   +N  G     AN+   PGLNTLG+S+  +    GG N PH+HP  TE   V+EG + VGF++T   L SK +  G+++V P  L+H++ N G     +++     LP    +  TL    P +P+ VL  AF+  +K I  ++SK
Sbjct:   10 FLSIVLIFLALCITLFTNPTLSLPALKLNPFQDFCVADLQATPTNSGYPCK--SQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLRSK 224          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.952e-32
Identity = 75/194 (38.66%), Postives = 112/194 (57.73%), Query Frame = 1
Query:   22 IFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLF---TATPPVPDNVLTKAFQV 594
            IF     +L+    ++QD CVAD  +     G++CK  A +T +DF ++GL   G   N   + VT A   + PG+N LG+SL+R+D   GG+ P HTHP A+E++ V++G +  GF+++ +    KT+KKG+I VFP+ L+HFQ N GD PA    +F+S  PG Q +   LF    AT  +    L  A Q+
Sbjct:    5 IFFTFFLLLSTSHASVQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFKNDLATELIAQTTLLDAPQI 198          
BLAST of FC873754 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.169e-31
Identity = 74/200 (37.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:   31 IIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKL 630
            +++ + A+   ++QD CVA+        G+ C    ++ A DF F+GL  PG   N + + VT A   + PGLN LG+S +R+D    G+ P HTHP A+E++FVL G +  GF+S+A+ +  +T+K G++ VFP+ L+HFQ N G   AS +  FNS  PG Q +   LF  + P    V T      T  ++K+K  L
Sbjct:    7 LLSLLFALSNASVQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLPTELVVGTTFLDATT--VKKLKGVL 204          
The following BLAST results are available for this feature:
BLAST of FC873754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL33_ARATH2.517e-3437.93Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GL31_ORYSJ4.293e-3437.85Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH9.564e-3435.24Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL813_ORYSJ1.631e-3336.97Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
ABP20_PRUPE1.631e-3337.14Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
AB19A_PRUPE3.077e-3236.84Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL93_ORYSJ4.018e-3237.50Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GLT3_ARATH6.854e-3234.10Germin-like protein subfamily T member 3 OS=Arabid... [more]
AB19B_PRUPE8.952e-3238.66Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL31_ARATH1.169e-3137.00Germin-like protein subfamily 3 member 1 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873754 ID=FC873754; Name=FC873754; organism=Citrus clementina; type=EST; length=834bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCCTACTTCATAGTTCATATGAAA
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