FC873755

Overview
NameFC873755
Unique NameFC873755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC873755 vs. ExPASy Swiss-Prot
Match: TPPC3_CAEEL (Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis elegans GN=ZK1098.5 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.996e-27
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = 1 
Query:  100 ANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQGLYYCNILSGVIRGALEMVSMK 510
            A+ ++++AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV RCVD R+ A+V+ +     +LG++AT S+W +     +I LE NPL + V++P      GL Y  +++G IRGALE V  K
Sbjct:   10 ADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLSYSQLIAGAIRGALEAVHFK 149
The following BLAST results are available for this feature:
BLAST of FC873755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPPC3_CAEEL1.996e-2745.71Probable trafficking protein particle complex subu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC04FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873755 ID=FC873755; Name=FC873755; organism=Citrus clementina; type=EST; length=769bp
GAAAAAAAACCTATAAATTCTGGTGATCAAATTTAGATATCGCTTTGCAG
AGATCTCATAATGGCTCCCGTTGGTCCTCGATCCGGTGACGCAATCTTCG
CCAACGTGGAACGCGTGAATGCTGAGCTGTTTACATTAACTTACGGCGCC
ACTGTGCGTCAGCTGCTCACGGATCTGGAGGAGGTTGAGGAAGTTAACAA
ACAGCTTGATCAAATGGGCTATAATATTGGGATTCGACTGATTGATGAGT
TTCTAGCAAAATCTAATGTCACTAGGTGTGTAGACTTCAGGGAGACTGCT
GAAGTGATTGCAAAGGTGGGTTTCAAAATGTTTTTAGGGGTTACTGCAAC
CGTGAGCAACTGGGATGCTGATGGGACATGTTGCAGTATAATTTTGGAAG
ATAATCCTCTGGTGGATTTTGTTGAGCTTCCTGATACTTGTCAAGGCCTT
TATTATTGCAACATCTTGAGTGGAGTCATTAGAGGGGCCCTAGAGATGGT
TTCAATGAAAACTGAAGTCACTTGGATCCGCGATGTGCTTCGAGGGGATG
ATGCATATGAGCTGCAGGTGAAACTTCTGAAACAAGTCCCAGAAGAATAT
CCATACAAGGATGATGAGTAATATCCTGTCTTGGTGCCTGATGCGGACAT
ACGGAGTTTACATTCTTGCACTTCATTTTCCCTAAAGAATATCAGTTTTA
ACAGCTTGTTCTCTGTATGAATATTCACTTGGGAGAAACTTTGAATANGT
TTTCCGTTTTCAAATGCAT
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