FC873777

Overview
NameFC873777
Unique NameFC873777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873777 vs. ExPASy Swiss-Prot
Match: RL21_SULTO (50S ribosomal protein L21e OS=Sulfolobus tokodaii GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 2 
Query:   68 GLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHV 340
            G R+RTR L  +  R++G +P LS  +  +K GDYV +K+N +VHKGMPH+ YHG+ G +    KR     +   +G++  +K I VR EH+
Sbjct:    7 GYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYHGKVGVIQG--KRGKAYIVRVTLGDK--EKVIIVRPEHL 94
[Close]
BLAST of FC873777 vs. ExPASy Swiss-Prot
Match: RL21_AERPE (50S ribosomal protein L21e OS=Aeropyrum pernix GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 2 
Query:   59 AGHGLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHK-GMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQP 346
            A  G R+RTR L  +P R+KG IP LSTYLR Y++GD V + +N +    GMPH+ +HG TG V  V KR    E+   +G +  +K + V   H++P
Sbjct:    4 APRGYRNRTRRLLRKPVREKGSIPRLSTYLREYRVGDKVAIIINPSFPDWGMPHRRFHGLTGTV--VGKRGEAYEVEVYLGRK--RKTLFVPPVHLKP 97
The following BLAST results are available for this feature:
BLAST of FC873777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL21_SULTO3.204e-1141.3050S ribosomal protein L21e OS=Sulfolobus tokodaii ... [more]
RL21_AERPE3.204e-1142.8650S ribosomal protein L21e OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AD05FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873777 ID=FC873777; Name=FC873777; organism=Citrus clementina; type=EST; length=743bp
CTCACATCTCCTTCCTCTTCACCAGAGAGAAAAAAGGACCAGTGACTCAA
ACATGCCGGCCGGTCACGGTTTGAGGTCCCGAACAAGGGATTTGTTCGCA
CGCCCCTTCAGAAAGAAGGGTTACATCCCCTTGTCCACTTACCTTAGGAC
TTACAAAATCGGCGACTACGTTGACGTCAAAGTGAACGGCGCCGTTCACA
AAGGTATGCCCCACAAGTTCTACCATGGACGTACCGGCCGTGTCTGGAAT
GTCACCAAGCGCGCCATCGGCGTCGAGATTAATAAGCAGGTTGGTAACAG
GATCATCAAGAAGAGGATTCATGTTCGCGTGGAGCATGTTCAACCTTCAA
GGTGTACCGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAACTCAAG
GCAGATGCTAAGGCAAGAGGTGAGGTCATCAGTACAAAGAGGCAGCCAAA
GGGCCCTAAACCTGGTTTCATGGTGGAAGGTGCAACATTGGAAACTGTCA
CTCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGTGGTTACTAGGTT
ATCTTTTTGGTATTGTTGCTGTTTTGTTACTTGTTGCAGACTTTTCTGGA
CATGGTCTTATTTGGATGTATTTTCATCCTTACTAGTTTTGTTTTTGGAG
AGGAACTGCAATTGCAGAGATGTTTATTTTTAATCTTCATTTTATATTAG
AAACAAGAGATGTTTTCCGATGCAAAAAAAAAAAAAAAAAAAA
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