FC873790

Overview
NameFC873790
Unique NameFC873790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 2
Query:   53 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 280
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG++
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGLL 78          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_NEUCR (60S ribosomal protein L40 OS=Neurospora crassa GN=ubi-1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL ALA K+N DKMICRKCYARL PRA NCRK+KCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_SCHPO (60S ribosomal protein L40 OS=Schizosaccharomyces pombe GN=ubi1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRKKKCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL ALA KYN DK +CRKCYARL PRA NCRK+KCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of FC873790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RUB2_ARATH7.780e-2060.53NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_CAEEL1.016e-1960.53NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RL40_NEUCR2.956e-1982.6960S ribosomal protein L40 OS=Neurospora crassa GN=... [more]
RL40_SCHPO5.043e-1982.6960S ribosomal protein L40 OS=Schizosaccharomyces p... [more]
RL40_YEAST6.586e-1980.7760S ribosomal protein L40 OS=Saccharomyces cerevis... [more]
NEDD8_RAT1.467e-1856.58NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT1.467e-1856.58NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE1.467e-1856.58NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN1.467e-1856.58NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN1.467e-1856.58NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DB08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873790 ID=FC873790; Name=FC873790; organism=Citrus clementina; type=EST; length=712bp
AGAGAGAGAGAGAAAGCGAGAGGAAAAGGAGAAAAGGGGGAAAAAAATGC
AGATCTTCGTGAAAACCCTAACGGGGAAGACCATTACCCTCGAGGTCGAA
TCCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGG
TATTCCGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGG
ATGGCCGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCAT
CTGGTTCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATT
GGCAAGGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCAC
GCCTGCACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGC
AACCAGCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAAT
GCTACATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCA
ACTATTGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGA
TGTTTCCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGT
GCCGTGACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCT
TACACTGATGTTTAAGCACCAATAAATTTTTCACTTTCATTGGTAAAAAA
AAAAAAAAAAAA
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