FC873790

Overview
NameFC873790
Unique NameFC873790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGHS+Q+RPKK +K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 277
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL  LA KYN +K ICRKCYARL PRA NCRKKKCGH++QLRPKKK K
Sbjct:    1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL  LA+KYN DK ICRKCYARL PRA NCRKKKCGHS++LR KKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL ALA K+N DKMICRKCY                    ARL PRA NCRK+KCGH+N +RPKKK+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  278 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGHSN LR KKK K
Sbjct:    2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52          
The following BLAST results are available for this feature:
BLAST of FC873790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RUB3_ORYSJ1.916e-1853.95NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RUB3_ARATH1.242e-1755.26NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
RL40_CRYNE1.622e-1776.9260S ribosomal protein L40 OS=Cryptococcus neoforma... [more]
NEDD8_DICDI1.622e-1753.25NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
RL40_EIMBO3.614e-1778.8560S ribosomal protein L40 OS=Eimeria bovis PE=2 SV... [more]
RL40_CAEEL3.614e-1778.8560S ribosomal protein L40 OS=Caenorhabditis elegan... [more]
UBL1_SCHPO4.720e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.163e-1552.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
RL40_TOBAC9.841e-1556.9460S ribosomal protein L40 OS=Nicotiana tabacum PE=... [more]
RL40_TETPY2.192e-1466.6760S ribosomal protein L40 OS=Tetrahymena pyriformi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DB08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873790 ID=FC873790; Name=FC873790; organism=Citrus clementina; type=EST; length=712bp
AGAGAGAGAGAGAAAGCGAGAGGAAAAGGAGAAAAGGGGGAAAAAAATGC
AGATCTTCGTGAAAACCCTAACGGGGAAGACCATTACCCTCGAGGTCGAA
TCCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGG
TATTCCGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGG
ATGGCCGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCAT
CTGGTTCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATT
GGCAAGGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCAC
GCCTGCACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGC
AACCAGCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAAT
GCTACATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCA
ACTATTGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGA
TGTTTCCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGT
GCCGTGACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCT
TACACTGATGTTTAAGCACCAATAAATTTTTCACTTTCATTGGTAAAAAA
AAAAAAAAAAAA
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