FC873790

Overview
NameFC873790
Unique NameFC873790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873790_ssr1 microsatellite FC873790_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10182 contig Ccv1_Contig10182:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   53 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            +IEPSL  LARKYN DK++CRKCYARLHPRAVNCRKKKCGHSN  RPKKK+K
Sbjct:    1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   53 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   53 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   53 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  275 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 430
            IIEPSL  LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 2
Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 274
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
BLAST of FC873790 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:  278 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 427
            IEPSL+ LARKY  DKMICRKCYARLHPRAVNCRKKKCGHSN LRPKKK+
Sbjct:    1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50          
The following BLAST results are available for this feature:
BLAST of FC873790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RL40_CANFA7.036e-2186.5460S ribosomal protein L40 OS=Canis familiaris GN=U... [more]
RL40_BOVIN7.036e-2186.5460S ribosomal protein L40 OS=Bos taurus GN=UBA52 P... [more]
RUB1_DESAN2.047e-2064.86NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RL40_ACACA2.047e-2082.6960S ribosomal protein L40 OS=Acanthamoeba castella... [more]
RUB2_ORYSJ2.674e-2063.51NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ2.674e-2063.51NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH2.674e-2063.51NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RL40_DROME2.674e-2084.6260S ribosomal protein L40 OS=Drosophila melanogast... [more]
NEDD8_DROME3.492e-2059.21NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RL40_DICDI4.561e-2088.0060S ribosomal protein L40 OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DB08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873790 ID=FC873790; Name=FC873790; organism=Citrus clementina; type=EST; length=712bp
AGAGAGAGAGAGAAAGCGAGAGGAAAAGGAGAAAAGGGGGAAAAAAATGC
AGATCTTCGTGAAAACCCTAACGGGGAAGACCATTACCCTCGAGGTCGAA
TCCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGG
TATTCCGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGG
ATGGCCGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCAT
CTGGTTCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATT
GGCAAGGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCAC
GCCTGCACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGC
AACCAGCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAAT
GCTACATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCA
ACTATTGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGA
TGTTTCCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGT
GCCGTGACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCT
TACACTGATGTTTAAGCACCAATAAATTTTTCACTTTCATTGGTAAAAAA
AAAAAAAAAAAA
back to top