FC873799

Overview
NameFC873799
Unique NameFC873799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: HLG3_MAIZE (Homeobox protein liguleless 3 (Fragment) OS=Zea mays GN=LG3 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   22 VREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +R E L+KR+ GKLP D  +VL  WW  H +WPYPTE+DK +L   TGL  KQINNWFINQRKR+W
Sbjct:   17 LRSEFLKKRKKGKLPKDARTVLLEWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 82          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOS6_ORYSJ (Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica GN=OSH1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 234
            +      +++E+ +K++ GKLP D    L NWW+ H KWPYP+E  K  L E TGL LKQINNWFINQRKR+W  + +
Sbjct:  251 YSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDE 328          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAT2_ARATH (Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            F S    ++ E  +K++ GKLP +    L +WW  H+KWPYPTE DK  L EETGL  KQINNWFINQRKR+W
Sbjct:  217 FGSHISSLKLEFSKKKKKGKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHW 289          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KN1_MAIZE (Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 234
            +      +++E+ +K++ GKLP +    L +WW QH KWPYP+E  K  L E TGL LKQINNWFINQRKR+W  + +
Sbjct:  251 YSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWDQHYKWPYPSETQKVALAESTGLDLKQINNWFINQRKRHWKPSEE 328          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOX3_HORVU (Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.076e-19
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +++E+ +K++ GKLP +    L +WW+ H KWPYP+E  K  L E TGL LKQINNWFINQRKR+W
Sbjct:  255 YSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHW 327          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNX10_MAIZE (Homeobox protein knotted-1-like 10 (Fragment) OS=Zea mays GN=KNOX10 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   31 EILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            E+ RK++ GKLP D    L +WWQ H +WPYP+E +KA L E TGL+ KQINNWFINQRKR+W
Sbjct:   23 ELSRKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLEAKQINNWFINQRKRHW 85          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAP2_MALDO (Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +++E+ +K++ GKLP D    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  288 YSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 360          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea GN=STM PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   22 VREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +++E ++KR+ GKLP +    L +WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  279 LKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 344          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   22 VREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +++E ++KR+ GKLP +    L +WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  278 LKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 343          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KN1_SOLLC (Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +++E+ +K++ GKLP D    L  WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  245 YSGYLSSLKQELSKKKKKGKLPKDARQKLITWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 317          
The following BLAST results are available for this feature:
BLAST of FC873799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HLG3_MAIZE3.222e-2062.12Homeobox protein liguleless 3 (Fragment) OS=Zea ma... [more]
KNOS6_ORYSJ7.177e-2050.00Homeobox protein knotted-1-like 6 OS=Oryza sativa ... [more]
KNAT2_ARATH7.177e-2056.16Homeobox protein knotted-1-like 2 OS=Arabidopsis t... [more]
KN1_MAIZE2.727e-1948.72Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=... [more]
KNOX3_HORVU6.076e-1950.68Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3... [more]
KNX10_MAIZE1.036e-1861.90Homeobox protein knotted-1-like 10 (Fragment) OS=Z... [more]
KNAP2_MALDO1.036e-1850.68Homeobox protein knotted-1-like 2 OS=Malus domesti... [more]
STM_BRAOL1.768e-1856.06Homeobox protein SHOOT MERISTEMLESS OS=Brassica ol... [more]
STM_ARATH1.768e-1856.06Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis... [more]
KN1_SOLLC1.768e-1850.68Homeotic protein knotted-1 OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AE11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873799 ID=FC873799; Name=FC873799; organism=Citrus clementina; type=EST; length=678bp
TTTAAATCAAGCTTTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGAAG
GGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTGGC
AGCAACACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGCTA
GTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATCAA
CCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTTAA
AGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATCTATCTTGACGATG
AATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAATAC
ACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACATAT
CGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCCTT
GGTAGCTACTATAGAATGTAATTGATGAGATGGGATTTACATAGCTTACT
TATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAACA
GGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCAATGATT
GTAAAATGTACATGATTGATCTTTGCTGATGTTGATGATTGTAAGCTTTG
GATAGCCTAAAAAAAAAAAAAAAAAAAA
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