FC873799

Overview
NameFC873799
Unique NameFC873799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig738 contig Ccv1_Contig738:53..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   22 VREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +++E ++KR+ GKLP +    L  WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  277 LKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 342          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   22 VREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +++E ++KR+ GKLP +    L +WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  253 LKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 318          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAT6_ARATH (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            F S    ++ E  +K++ GKLP +    L +WW  H KWPYPTE DK  L + TGL  KQINNWFINQRKR+W
Sbjct:  233 FGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKRHW 305          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAP1_MALDO (Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +++E+ +K++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  289 YSGYLSSLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 361          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: RSH1_MAIZE (Homeobox protein rough sheath 1 OS=Zea mays GN=RS1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +R+E  +K++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  241 YSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 313          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSJ (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica GN=OSH15 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +R+E  +K++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  245 YSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSI (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica GN=OSH15 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +R+E  +K++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  245 YSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOS4_ORYSJ (Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   31 EILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            E+ +K++ GKLP D    L +WWQ H +WPYP+E +KA L E TGL  KQINNWFINQRKR+W
Sbjct:  219 ELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHW 281          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +++E+ +K++ GKLP +    L  WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  288 YSGYLSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 360          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOX4_MAIZE (Homeobox protein knotted-1-like 4 (Fragment) OS=Zea mays GN=KNOX4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +      +R+E  +K++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:   10 YSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAEATGLDQKQINNWFINQRKRHW 82          
The following BLAST results are available for this feature:
BLAST of FC873799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HSBH1_SOYBN2.309e-1856.06Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV... [more]
LET6_SOLLC3.015e-1856.06Homeobox protein knotted-1-like LET6 OS=Solanum ly... [more]
KNAT6_ARATH3.015e-1853.42Homeobox protein knotted-1-like 6 OS=Arabidopsis t... [more]
KNAP1_MALDO3.015e-1849.32Homeobox protein knotted-1-like 1 OS=Malus domesti... [more]
RSH1_MAIZE3.938e-1850.68Homeobox protein rough sheath 1 OS=Zea mays GN=RS1... [more]
KNOSC_ORYSJ3.938e-1850.68Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOSC_ORYSI3.938e-1850.68Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOS4_ORYSJ3.938e-1860.32Homeobox protein knotted-1-like 4 OS=Oryza sativa ... [more]
KNAT1_ARATH3.938e-1849.32Homeobox protein knotted-1-like 1 OS=Arabidopsis t... [more]
KNOX4_MAIZE5.143e-1850.68Homeobox protein knotted-1-like 4 (Fragment) OS=Ze... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AE11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873799 ID=FC873799; Name=FC873799; organism=Citrus clementina; type=EST; length=678bp
TTTAAATCAAGCTTTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGAAG
GGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTGGC
AGCAACACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGCTA
GTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATCAA
CCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTTAA
AGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATCTATCTTGACGATG
AATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAATAC
ACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACATAT
CGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCCTT
GGTAGCTACTATAGAATGTAATTGATGAGATGGGATTTACATAGCTTACT
TATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAACA
GGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCAATGATT
GTAAAATGTACATGATTGATCTTTGCTGATGTTGATGATTGTAAGCTTTG
GATAGCCTAAAAAAAAAAAAAAAAAAAA
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