FC873799

Overview
NameFC873799
Unique NameFC873799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig738 contig Ccv1_Contig738:53..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOX3_MAIZE (Homeobox protein knotted-1-like 3 (Fragment) OS=Zea mays GN=KNOX3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   19 DVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            ++R+E+ +KR+  KLP +    L +WW+ H +WPYP+E +K  L E TGL+ KQINNWFINQRKR+W
Sbjct:   19 NLRKELCKKRKKDKLPKEARQKLLSWWELHYRWPYPSEMEKIALAESTGLEQKQINNWFINQRKRHW 85          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOX8_MAIZE (Homeobox protein knotted-1-like 8 (Fragment) OS=Zea mays GN=KNOX8 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   22 VREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +R+E  ++++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:   17 LRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHW 82          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOS8_ORYSJ (Homeobox protein knotted-1-like 8 OS=Oryza sativa subsp. japonica GN=OSH43 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +  S  D+R+   ++ + GKLP +    L +WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  216 YGGSLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHW 288          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOS7_ORYSJ (Homeobox protein knotted-1-like 7 OS=Oryza sativa subsp. japonica GN=OSH3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   22 VREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +R+E+ +KR+ GKLP +    L  WW+ H +WP P+E +K  L E TGL+ KQINN FINQRKR+W
Sbjct:  243 LRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHW 308          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOS9_ORYSJ (Homeobox protein knotted-1-like 9 OS=Oryza sativa subsp. japonica GN=Os03g0772100 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 FKSSFEDVREEILRKRRAGKLPGDTTSVLKNWWQQH-SKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +  S  D+R+   ++ + GKLP +    L +WW+ H  KWPYP+E +K  L + TGL  KQI+NWFINQRKR+W
Sbjct:  217 YGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSEVEKMTLAQTTGLDQKQISNWFINQRKRHW 290          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: KNOS5_ORYSJ (Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp. japonica GN=Os03g0673500 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   40 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 219
            +K   G LP D    L  WW  H +WPYP+E +KA L E TGL  KQ+ NWFINQRKR+W
Sbjct:  229 KKNSTGHLPRDARHKLLQWWHLHYRWPYPSEAEKAALAESTGLDKKQVTNWFINQRKRHW 288          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: HBX9_DICDI (Homeobox protein 9 OS=Dictyostelium discoideum GN=hbx9 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   34 ILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 213
            I+++++ GKLPG+ TS+LK W  +H+  PYPTE++K  L   T L   QINNWF N R+R
Sbjct:  557 IVKRKKRGKLPGEATSILKKWLFEHNMHPYPTEEEKVALANSTFLSFNQINNWFTNARRR 616          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: ME3L2_HUMAN (Putative homeobox protein Meis3-like 2 OS=Homo sapiens GN=MEIS3P2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   16 EDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 213
            ED+ +E  R ++ G  P   T++++ W  QH   PYP+E+ K +LV++TGL + Q+NNWFIN R+R
Sbjct:  237 EDLDQEPRRNKKRGIFPKVATNIMRAWLFQHLWHPYPSEEQKKQLVQDTGLTILQVNNWFINARRR 302          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: MEIS3_HUMAN (Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   16 EDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 213
            ED+ +E  R ++ G  P   T++++ W  QH   PYP+E+ K +L ++TGL + Q+NNWFIN R+R
Sbjct:  254 EDLDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 319          
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: ME3L1_HUMAN (Putative homeobox protein Meis3-like 1 OS=Homo sapiens GN=MEIS3P1 PE=5 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   16 EDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 213
            ED+ +E  R ++ G  P   T++++ W  QH   PYP+E+ K +L ++TGL + Q+NNWFIN R+R
Sbjct:  153 EDLDQEPRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 218          
The following BLAST results are available for this feature:
BLAST of FC873799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
KNOX3_MAIZE1.497e-1753.73Homeobox protein knotted-1-like 3 (Fragment) OS=Ze... [more]
KNOX8_MAIZE1.955e-1754.55Homeobox protein knotted-1-like 8 (Fragment) OS=Ze... [more]
KNOS8_ORYSJ7.427e-1749.32Homeobox protein knotted-1-like 8 OS=Oryza sativa ... [more]
KNOS7_ORYSJ1.829e-1553.03Homeobox protein knotted-1-like 7 OS=Oryza sativa ... [more]
KNOS9_ORYSJ5.323e-1547.30Homeobox protein knotted-1-like 9 OS=Oryza sativa ... [more]
KNOS5_ORYSJ6.952e-1555.00Putative homeobox protein knotted-1-like 5 OS=Oryz... [more]
HBX9_DICDI8.498e-1350.00Homeobox protein 9 OS=Dictyostelium discoideum GN=... [more]
ME3L2_HUMAN3.570e-1143.94Putative homeobox protein Meis3-like 2 OS=Homo sap... [more]
MEIS3_HUMAN4.663e-1142.42Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE... [more]
ME3L1_HUMAN4.663e-1142.42Putative homeobox protein Meis3-like 1 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AE11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873799 ID=FC873799; Name=FC873799; organism=Citrus clementina; type=EST; length=678bp
TTTAAATCAAGCTTTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGAAG
GGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTGGC
AGCAACACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGCTA
GTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATCAA
CCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTTAA
AGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATCTATCTTGACGATG
AATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAATAC
ACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACATAT
CGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCCTT
GGTAGCTACTATAGAATGTAATTGATGAGATGGGATTTACATAGCTTACT
TATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAACA
GGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCAATGATT
GTAAAATGTACATGATTGATCTTTGCTGATGTTGATGATTGTAAGCTTTG
GATAGCCTAAAAAAAAAAAAAAAAAAAA
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