FC873799

Overview
NameFC873799
Unique NameFC873799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig738 contig Ccv1_Contig738:53..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873799 vs. ExPASy Swiss-Prot
Match: PKNX1_MOUSE (Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   25 REEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 267
            +E+   K + G LP   T+V+++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R       S  S   K K+
Sbjct:  254 QEDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKK 334
The following BLAST results are available for this feature:
BLAST of FC873799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PKNX1_MOUSE7.954e-1140.74Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AE11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873799 ID=FC873799; Name=FC873799; organism=Citrus clementina; type=EST; length=678bp
TTTAAATCAAGCTTTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGAAG
GGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTGGC
AGCAACACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGCTA
GTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATCAA
CCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTTAA
AGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATCTATCTTGACGATG
AATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAATAC
ACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACATAT
CGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCCTT
GGTAGCTACTATAGAATGTAATTGATGAGATGGGATTTACATAGCTTACT
TATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAACA
GGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCAATGATT
GTAAAATGTACATGATTGATCTTTGCTGATGTTGATGATTGTAAGCTTTG
GATAGCCTAAAAAAAAAAAAAAAAAAAA
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