FC873805

Overview
NameFC873805
Unique NameFC873805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 51/159 (32.08%), Postives = 70/159 (44.03%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            G   +     L++F  HE + LL G     +   L  + K+  GY+  S  I    E+M  F P ++    +FVT   R P  G   L P   I +    T+   A  G        + LPS  TC N LKLP Y     M +KL+YAI+   G F+LS
Sbjct:  990 GLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDV-----ERLPSASTCYNTLKLPTYKRASTMREKLLYAITSNAG-FELS 1142          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.774e-12
Identity = 53/164 (32.32%), Postives = 74/164 (45.12%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GFN+V  +  L+ F   EL+ +LCG +E+    W+  A+  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L                      GP +   D       LP   TC N L LPPY + E + +KL+YAI E +G
Sbjct:  727 GFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDRVGKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEETEG 866          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.774e-12
Identity = 52/164 (31.71%), Postives = 74/164 (45.12%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GFN+V  +  L+ F   EL+ +LCG +E+    W+ + +  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L                      GP +   D       LP   TC N L LPPY + E + +KL+YAI E +G
Sbjct:  727 GFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKSTIYRH------YTKNSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDKVGKETWLPRSHTCFNRLDLPPYKSYEQLREKLLYAIEETEG 866          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   32 LQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            +++F   EL  L+ G R+  +   L  + ++  GY  +   IV+  E++ EF  +++  F +FVT  P+ P  G   L+PK  I            + GT         LP+  TC N LKLP Y  K I+ +KL+YAI+ G   FDLS
Sbjct:  780 MEMFNSIELQMLISGERDNIDLDDLKSNTEYG-GYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKALDPKFGI-----------RNAGTEKYR-----LPTASTCVNLLKLPDYRNKTILREKLLYAINSG-ARFDLS 910          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 52/164 (31.71%), Postives = 74/164 (45.12%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GFN++     LQ F   EL+ LLCG +E+    W+  A+  H      YT  S  I+   + + E   +++    QFVTG  RLP GG A L                      GP +        ++ LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  721 GFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH------YTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL------------------MGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 860          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GF+ V    +L +  P E++ L+CG  +L +  AL    ++D GY      I    +++  F  D Q+    F TG+ R+P GG+A LN K++                   +E++ + LP   TC N L LPPY +K+ + +KL+  IS  +G
Sbjct:  639 GFHSVCASNALMLLRPEEVEILVCGSPDL-DMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKIS------------------KNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEG 772          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GF+ V    +L +  P E++ L+CG  +L +  AL    ++D GY      I    +++  F  D Q+    F TG+ R+P GG+A LN K++                   +E++ + LP   TC N L LPPY +K+ + +KL+  IS  +G
Sbjct:  639 GFHSVCASNALMLLRPEEVEILVCGSPDL-DMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKIS------------------KNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEG 772          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 54/168 (32.14%), Postives = 77/168 (45.83%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMG-EFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI----VRKHSSTAPNTASNGTG----PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 478
            GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTPD++  F +FVT   R P  G A L P  +I    V     T     S   G            LP+  TC N LKLP YS K ++ +KL YAIS   G F+LS
Sbjct:  902 GFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTG-FELS 1068          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.680e-11
Identity = 47/157 (29.94%), Postives = 81/157 (51.59%), Query Frame = 2
Query:    2 GFNQVF-DITSLQIFTPHELDHLLCGRREL--WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GF +VF +  S+++F   EL+ L+CG  E   ++  +L    K+  G++  S A+    EI+  +    Q+   QFVT + R+P  G++ +  K++++  H S                 DDLP   TC N + L  YS+K+ +  KL++AI+E +G
Sbjct:  749 GFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTIPFKISLLGSHDS-----------------DDLPLAHTCFNEICLWNYSSKKKLELKLLWAINESEG 888          
BLAST of FC873805 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 52/164 (31.71%), Postives = 72/164 (43.90%), Query Frame = 2
Query:    2 GFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 463
            GFN+V  +  LQ F   EL+ +LCG +E+    W+   +  H      YT  S  I+   + + E   + +    QFVTG  RLP GG A L                      GP +        D  LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  775 GFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH------YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL------------------MGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 914          
The following BLAST results are available for this feature:
BLAST of FC873805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UPL7_ARATH4.421e-1232.08E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]
WWP2_MOUSE5.774e-1232.32NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
WWP2_HUMAN5.774e-1231.71NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Hom... [more]
HUL5_YEAST7.540e-1232.89Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
ITCH_MOUSE9.848e-1231.71E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]
HECD2_PONAB9.848e-1230.52Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
HECD2_HUMAN9.848e-1230.52Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
UBE3B_HUMAN1.286e-1132.14Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]
HUL4_YEAST1.680e-1129.94Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
WWP1_MOUSE2.865e-1131.71NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873805 ID=FC873805; Name=FC873805; organism=Citrus clementina; type=EST; length=816bp
TGGCTTCAATCAGGTCTTTGACATCACATCATTACAAATATTTACTCCTC
ATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCG
GCGCTTGCTGAGCATATAAAATTCGATCATGGATACACTGCCAAGAGTCC
TGCAATTGTTAACTTACTAGAGATCATGGGAGAATTCACACCAGATCAGC
AGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGT
GGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTC
AACTGCACCTAATACAGCATCAAATGGAACCGGGCCTTCGGAATCAGCGG
ATGATGACTTGCCAAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCT
CCTTACTCTACCAAGGAAATTATGTACAAGAAACTGGTTTATGCAATAAG
CGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTCAAAACTAACCGAT
GGACCTTTGTATATTAATATATGTGTCATCAAGTCAATTCTCTTACCTGG
GGATTATTCATCTTTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTG
CTTTTCACTGCCCTTGTATCAATGTTCACATCATTGGCAAGTTGATTTTT
TTTGTTTCAGGTCAGACTTCAGGCTGCCACAGTGCCACACTCTCTCAACA
GAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGGCTGCTGCTAGGAC
TTTGTATATAAATAGGAAACTTAGATTTTTTTGTCTTTTTTTCCCTCATT
GACAAGTTATTGGGCT
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