FC873808

Overview
NameFC873808
Unique NameFC873808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14378 contig Ccv1_Contig14378:43..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.828e-32
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 2
Query:  125 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            ITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.917e-32
Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   53 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            MA L  +S LVL CM+V GP++  A ++CG V+G+LA CI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.165e-31
Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 2
Query:   53 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            MA L  +S LVL CM+V GP++  A ++CG V+G+LA CI YL   GP+P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C+ V+
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 2
Query:   53 MAALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            MA++K+V   ++  +V  P++  AITCG+V  +LAPC+ YL+ G      CC GVR+LN+AA TTPDRQ ACNCLK AAGSI  LN NNA  LP  C V+IPYKIS ST+C+ +R
Sbjct:    1 MASMKVVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   53 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            MA L  +S LVL CM+V GP++  A ++CG V+G+LA CI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA + P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   65 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            K+   +VLCM+V  P  A+AITCGQVT +LAPC+ YLR+ GP+   CC GV++L  +ARTT DRQ AC CLK AAG+I  +N   A GLP  CGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.389e-31
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  125 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            ITCGQV+ SLAPCI YLR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 2
Query:  125 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            ITCGQV+ +LAPCI Y++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 2
Query:   80 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            LV+CM+V  P++  AI+CG VTG L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNC+K AA SI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   12 LVMCMIVA-PMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of FC873808 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 2
Query:   59 ALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            +LKL   +VLCM+V  PL+  A+T GQVT SLAPCI YLR  G   VP  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
The following BLAST results are available for this feature:
BLAST of FC873808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_PRUPE6.828e-3264.84Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTPB_BRAOT8.917e-3258.97Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP3_BRANA1.165e-3156.41Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP_CICAR1.987e-3155.65Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP1_BRANA1.987e-3158.12Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP1_TOBAC2.595e-3160.36Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
LTP1_MORNI3.389e-3170.33Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDO5.780e-3162.64Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP5_LENCU7.549e-3161.68Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP2_GOSHI7.549e-3158.26Non-specific lipid-transfer protein OS=Gossypium h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DC08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873808 ID=FC873808; Name=FC873808; organism=Citrus clementina; type=EST; length=621bp
AAGGCAAAAAAAAAAAAGAAAAAGAAAAAGAAAATCTCAGGAGAAATCTC
AAATGGCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCATGTTGGTG
ACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTGACTGGCTC
ATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTATACCTGTGC
CATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAACCACACCT
GACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCC
TAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCA
GCATTCCTTACAAGATCAGCATCTCTACTGACTGCTCTAAGGTCCGGTGA
ACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATA
AATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCT
ACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTT
ATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATT
AAATGAAATCTTGCCTTGTGT
back to top