FC873810

Overview
NameFC873810
Unique NameFC873810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y968_STAEQ (Uncharacterized hydrolase SERP0968 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0968 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.343e-26
Identity = 73/183 (39.89%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  148 RRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDK--LEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA 684
            RR +H+ PEL   E  T++ I   L+ LG+PY  P+ KTG++A +   S   +A RAD+DALP+ E  + + KSK D  MHACGHD HTT L+   K      DK  L   V  +FQPAEE G GA  +IK GA      EA+FG H++     G I        A+ + +   ++G   H A
Sbjct:   11 RRHLHQYPELSLHEFETTSYITSFLEDLGVPYDRPL-KTGVIAYLEGNSHHTIAFRADIDALPIYEENDIDFKSKNDHVMHACGHDGHTTALMLFVKRCKALYDKSELPHNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITASATEYRFFLKGLSSHVA 192          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y1513_STAHJ (Uncharacterized hydrolase SH1513 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1513 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.343e-26
Identity = 73/213 (34.27%), Postives = 116/213 (54.46%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDK--LEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA---MPHSTIDPILTASSVILALQQ 747
            +++   RR +H++PEL   E  T+  I + L++LG+ Y  P+ +TG +A +   S   +A RAD+DALP+ E  + +++S+ D  MHACGHD HTT L+   K   +  DK  L   V  +FQPAEE G GA  +IK GA  +   EA+FG+H++     G +        A+ + +   ++G   H A     HS  + +L   + +  +QQ
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTKYITQFLEELGVSYERPL-ETGAIAYLNGNSDHTIAFRADIDALPIFEENDVDYRSQTDNVMHACGHDGHTTALMLFVKRCKEMFDKGTLPHNVVFIFQPAEETGGGANRLIKAGAFNNYPIEAVFGIHVNPFADEGQVVIRDEEITASATEYRFFLKGLSSHVADKEQGHSCGEALLHVLNQVGQIQQ 216          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LACPL (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus plantarum GN=dapL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.992e-26
Identity = 68/223 (30.49%), Postives = 113/223 (50.67%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPY----AYPVAKTGIVAQIGSGSRPV-VALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGAL-GD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQS 780
            L+ + + +H+ PE+  +EH T A +   + K+   +      P   T I+ ++        +  R D+DALP+ E       S   G MHACGHD+H ++ LG      + +   +  +  +FQPAEE  +G   + + GAL GD   + IF  H +  +PTG+I    G   A T   +  + G+ GHAA PH   D ++  ++++  LQ +++R  DP+QS
Sbjct:    8 LIPIYQHLHQIPEIGLQEHETQAYLLSIIGKMPQEWLTIKTIPTLDTAILVKVSGLKHDYRIGYRTDIDALPVTENTGLPFASTHPGVMHACGHDIHMSVALGILSYFAENRPATD--MVFMFQPAEENASGGQRLYESGALDGDWMPDEIFAFHDNPNLPTGAIGCRMGTLFAGTCEIHAHLSGKSGHAAYPHQANDMVVAGAALVSQLQTIVARNVDPIQS 228          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y1352_STAS1 (Uncharacterized hydrolase SSP1352 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1352 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.137e-25
Identity = 68/189 (35.98%), Postives = 101/189 (53.44%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDK--LEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA 684
            +++   RR +H++PEL   E+ T+  I   LD LG+PY  P+  TG++A +   S   +A RAD+DALP+ E     ++S++D  MHACGHD HTT L+   K      DK  L   +  +FQPAEE G GA  +I+ GA      EA+FG+H+      G +        A+ + +   + G   H A
Sbjct:    5 EFVTEHRRYLHKHPELSLHEYETTKYIAHFLDDLGVPYERPL-DTGVIAYLSGNSTHTIAYRADIDALPIYEENNVSYRSEVDHVMHACGHDGHTTALMLFVKRCKNLADKGELPQNIVFIFQPAEETGGGANRLIRAGAFEKYPIEAVFGIHVMPFENEGRVVIRDEEITASATEYRFYLHGLSSHVA 192          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LACF3 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dapL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.137e-25
Identity = 79/229 (34.50%), Postives = 118/229 (51.53%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALI-----RRELDKLGI--PYAYPVAKTGIVAQIGSGSRPV--VALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDS---EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQS 780
            L+ +R  +H+ PEL  +E  T A +     + E D L I  P   P   T I+ ++ +G+ PV  +  R D+DALP+QE     + S   G MHACGHDVH T+ LG       HQ KD L       FQPAEE  AG     + G        +  +G+H +  + TG I    G   A T+  ++ V G+ GHAA P    D ++ A+++I+ +Q +ISR  +P+++
Sbjct:    7 LIQIRHHLHQIPELALQETETHAYLMEVIGKMEQDHLEILEPEDLP---TAILVRV-NGTAPVRTIGYRTDIDALPVQEETGLPYASTHSGVMHACGHDVHMTVALGVLDYFASHQPKDNL----LFFFQPAEESEAGGQRAYELGLFEGKWRPDEFYGLHDNPALKTGVIGCRLGTLFAGTTEVDIDVLGKDGHAAFPQEANDAVVAAAALIMQVQTIISRSINPVEA 227          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y1398_STAAM (Uncharacterized hydrolase SAV1398 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1398 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 75/214 (35.05%), Postives = 114/214 (53.27%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA---MPHSTIDPILTASSVILALQQ 747
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A     HS  + +    + I  +QQ
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVADKEQAHSCGEALQHVLTQISQIQQ 216          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y1230_STAAN (Uncharacterized hydrolase SA1230 OS=Staphylococcus aureus (strain N315) GN=SA1230 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 75/214 (35.05%), Postives = 114/214 (53.27%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA---MPHSTIDPILTASSVILALQQ 747
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A     HS  + +    + I  +QQ
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVADKEQAHSCGEALQHVLTQISQIQQ 216          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y1433_STAAC (Uncharacterized hydrolase SACOL1433 OS=Staphylococcus aureus (strain COL) GN=SACOL1433 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.776e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y1410_STAAR (Uncharacterized hydrolase SAR1410 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1410 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.776e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTTLMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y1399_STAA8 (Uncharacterized hydrolase SAOUHSC_01399 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_01399 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.776e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
The following BLAST results are available for this feature:
BLAST of FC873810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
Y968_STAEQ1.343e-2639.89Uncharacterized hydrolase SERP0968 OS=Staphylococc... [more]
Y1513_STAHJ1.343e-2634.27Uncharacterized hydrolase SH1513 OS=Staphylococcus... [more]
DAPL_LACPL2.992e-2630.49Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
Y1352_STAS11.137e-2535.98Uncharacterized hydrolase SSP1352 OS=Staphylococcu... [more]
DAPL_LACF31.137e-2534.50Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
Y1398_STAAM3.657e-2435.05Uncharacterized hydrolase SAV1398 OS=Staphylococcu... [more]
Y1230_STAAN3.657e-2435.05Uncharacterized hydrolase SA1230 OS=Staphylococcus... [more]
Y1433_STAAC4.776e-2436.84Uncharacterized hydrolase SACOL1433 OS=Staphylococ... [more]
Y1410_STAAR4.776e-2436.84Uncharacterized hydrolase SAR1410 OS=Staphylococcu... [more]
Y1399_STAA84.776e-2436.84Uncharacterized hydrolase SAOUHSC_01399 OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873810 ID=FC873810; Name=FC873810; organism=Citrus clementina; type=EST; length=791bp
CAACGGATTGTTATTGAGATGGCGATTGCCTTTTTGCTTCTTCTACTACC
GATCACTTATCTCACTACGACCACAGCAGTTGATGAAATACTTACAAATC
AAGTTATGATATCAGCTCAACAAGATAAAGATTGGCTAGTCTCTGTAAGA
AGACAAATCCATGAAAACCCGGAACTGCTATTCGAAGAACACAACACAAG
TGCCCTCATTCGCAGAGAACTTGATAAACTTGGAATCCCTTATGCATACC
CAGTCGCCAAAACAGGCATTGTAGCACAGATTGGCTCTGGTTCTCGCCCT
GTCGTCGCGTTGAGAGCTGACATGGATGCTCTCCCTTTGCAAGAGCTCGT
GGAATGGGAGCATAAGAGCAAAATTGATGGCAAAATGCACGCATGTGGAC
ATGACGTCCACACCACCATGCTTCTTGGTGCTGCCAAGTTGCTTCATCAA
CGTAAAGATAAACTTGAGGGAACTGTGAGAATTCTTTTCCAACCTGCTGA
GGAGGGAGGTGCAGGTGCCTTTCACATGATAAAAGAAGGCGCTCTTGGTG
ACTCTGAAGCAATATTTGGAATGCATATTGACGTAGGAATACCTACAGGA
AGTATAGCATCAATTTCTGGGCCACACTTGGCTGCTACATCCGTTTTTAA
TGTTAAAGTAGAGGGAAGAGGCGGACATGCTGCAATGCCCCATTCAACAA
TCGATCCTATACTTACTGCTTCATCTGTGATATTGGCATTGCAGCAACTT
ATTTCAAGAGAAGCAGATCCCCTCCAAAGTCTAGTATGTCT
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