FC873810

Overview
NameFC873810
Unique NameFC873810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1228 contig Ccv1_Contig1228:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_OCEIH (Putative N-acetyldiaminopimelate deacetylase OS=Oceanobacillus iheyensis GN=dapL PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.811e-31
Identity = 83/222 (37.39%), Postives = 124/222 (55.86%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAK--TGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIK--EGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            L  +RR +H+ PEL F+E  T A +   ++++       + K  TGI+  + G      +  RAD+D LP+ E     + S  +G+MHACGHD+H T+ LGA + L Q  D +   V  +FQPAEEG  GA  M++  E      + +F +HI   +P G+++S +G   A TS   +  EG GGHAA PH T D  + AS+ ++ LQQ++SR  +PL   V
Sbjct:    5 LEQIRRDLHQIPELGFQEFKTQAYLLERINEIATENV-EIKKWSTGILVYVHGKSPARKIGFRADIDGLPILEQTNLPYASLHEGRMHACGHDLHMTIALGALEKLIQ--DPINDDVIFVFQPAEEGPGGAKPMLESEEFQQWKPDMMFALHIAPELPVGTVSSKAGLLFANTSELFIDFEGVGGHAAYPHLTKDMTVAASNFVVQLQQIVSRGLNPLDGSV 223          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_BACA2 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus amyloliquefaciens (strain FZB42) GN=dapL PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.811e-31
Identity = 84/231 (36.36%), Postives = 129/231 (55.84%), Query Frame = 1
Query:  124 DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAK-------TGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            +K+ L+++RR +H  PE+ F+E+ T   +   L++      YP  +       TGI  ++ G+    ++A RAD+DAL ++E       S+  G MHACGHD+H T+ LG     H     ++  +  LFQPAEEG  GA  M++   L     + I  +HI   +P G+I++ SG   A TS   + +EG+GGHAA PH+  D ++ AS+++  LQ +ISR  DPL S V
Sbjct:    2 EKERLIAIRRDLHRIPEIGFQEYKTQQYLLNLLNQ------YPEERIEIETWRTGIFVKVNGTAPEKMLAYRADIDALSIEEQTGLPFASEHPGFMHACGHDMHMTIALGIID--HFVHHPVKHDLLFLFQPAEEGPGGAEPMLESDVLKKWTPDLITALHIAPELPVGTISTKSGLLFANTSELVIDLEGKGGHAAYPHTADDMVVAASTLVTQLQTVISRNTDPLDSAV 224          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LEUCK (Putative N-acetyldiaminopimelate deacetylase OS=Leuconostoc citreum (strain KM20) GN=dapL PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.034e-31
Identity = 88/232 (37.93%), Postives = 125/232 (53.88%), Query Frame = 1
Query:  115 AQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPY----AYPVAKTGIVAQIGSGSRPV--VALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEE---GGAGAFHM-IKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPL 774
            ++ + + L + RR++H+ PE   EE  T   +  +L      Y          T I+     G+ PV  +  R D+DALP+QE    +  S+  GKMHACGHDVH TM LG A+    HQ KD L     I FQPAEE   GG  A+ M + EG     E  +G+H    +P G++++++G   A T+   V V G GGHAA PH   DPI+ A+ +I+ LQ ++SR  DP+
Sbjct:    2 SEMNFETLQTFRRELHQIPETALEEFKTHDYLLTKLKSWQQDYMTIKTVEALPTAILVYF-QGTNPVRTIGYRTDIDALPIQEATGLDFASQHPGKMHACGHDVHMTMALGLAQYFSQHQPKDNLI----IFFQPAEEAESGGKVAYDMGLFEGKWRPDE-FYGIHDQPNLPAGTLSTLAGTLFAGTAELKVDVIGTGGHAAYPHLAKDPIVIAAELIIQLQTVVSRSVDPI 227          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_GEOTN (Putative N-acetyldiaminopimelate deacetylase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dapL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 78/220 (35.45%), Postives = 121/220 (55.00%), Query Frame = 1
Query:  139 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYA-YPVAKTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            V++RR +H+ PEL F+E  T   +   +  L          KTGI  ++ G+  R  +  RAD+D LP+ E     ++S+  G+MHACGHDVH ++ LG   L H   + +   +  +FQPAEEG  GA  M++   + +   + I  +HI    P G+IA+  G   A TS   + ++G+GGHAA PH   D ++ A +++  LQ +++R  DPL S V
Sbjct:    8 VAIRRDLHKIPELGFQEFKTQQYLLNYIQSLPQERLDVRTWKTGIFVKVSGTAPRKTIGYRADIDGLPISEETGLPYRSEHAGQMHACGHDVHMSIALGV--LTHFAHNPIRDDLLFIFQPAEEGPGGAKPMLESDIMREWKPDMIVALHIAPEYPVGTIATKEGLLFANTSELFIDLKGKGGHAAFPHLANDMVVAACALVTQLQSIVARNVDPLDSAV 225          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_BACSU (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus subtilis GN=dapL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 84/227 (37.00%), Postives = 124/227 (54.63%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAK-------TGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            L+++RR +H  PEL F+E  T   +   L++      YP  +       TG+  ++ G+    ++A RAD+DAL ++E       S+  G MHACGHD+H T+ LG     H     ++  +  LFQPAEEG  GA  M++   L     + I  +HI   +P G+IA+ SG   A TS   + +EG+GGHAA PH   D ++ AS+++  LQ +ISR  DPL S V
Sbjct:    6 LIAIRRDLHRIPELGFQEFKTQQYLLNVLEQ------YPQDRIEIEKWRTGLFVKVNGTAPEKMLAYRADIDALSIEEQTGLPFASEHHGNMHACGHDLHMTIALGIID--HFVHHPVKHDLLFLFQPAEEGPGGAEPMLESDVLKKWQPDFITALHIAPELPVGTIATKSGLLFANTSELVIDLEGKGGHAAYPHLAEDMVVAASTLVTQLQTIISRNTDPLDSAV 224          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_BACLD (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dapL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 82/229 (35.81%), Postives = 124/229 (54.15%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAK-------TGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDSEA--IFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            D L ++RR +H+ PEL F+E+ T A +   L K      +P  +       TG+  ++ G+    ++A RADMD L ++E   +   S    +MHACGHD H T+ LG     H  +  ++  +  LFQPAEEG  GA  M++       E   I  +HI   +P G+I + SG   A TS   +++EG+GGHAA PH   D ++ ASS++  +Q +++R  DPL S V
Sbjct:    4 DELAAIRRDLHQIPELGFQEYKTQAYLLNHLAK------HPEGRIEIEKWRTGLFVKVKGTAPEKILAYRADMDGLSIREDTGYSFSSVHQDRMHACGHDFHMTIALGIID--HFVRHPVKQDLLFLFQPAEEGPGGAEPMLESDLFKKWEPSMITALHIAPELPVGTIGTKSGLLFANTSELVIELEGKGGHAAYPHLAEDMVVAASSLVTQMQSIVARNVDPLDSAV 224          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_STRSV (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus sanguinis (strain SK36) GN=dapL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 80/223 (35.87%), Postives = 122/223 (54.71%), Query Frame = 1
Query:  139 VSVRRQIHENPELLFEEHNTSALIRRELDKL--GIPYA-YPVAKTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQR-KDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            +++RR +H+ PE+  EE+ T A + + +D L  G+ +      +TGI+  I GS     +  R D+D LP+ E    +  S  +G+MHACGHD+H T+ LG   LL Q    +    +  LFQPAEE  AG   M ++GA GD   +  +G+H+   +  G IA+  G   A T    +  +G+GGHAA PH   D ++ AS  I  +Q ++SR  DP++  V
Sbjct:    5 LNIRRDLHQIPEIGLEEYKTHAYLMQVIDGLTAGLDFVEIRTWRTGILVFIKGSSPDKTIGWRTDIDGLPIVEDTGLDFASTHEGRMHACGHDMHMTVALG---LLEQAVSTQPTHNLLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDLKVGDIATNRGTLFAGTCEVKLTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDPIEGAV 224          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y4TI_RHISN (Uncharacterized hydrolase y4tI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01500 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.002e-30
Identity = 76/229 (33.19%), Postives = 123/229 (53.71%), Query Frame = 1
Query:   91 LTNQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQI---GSGSRPVVALRADMDALPLQELVE-WEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEG-GAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISRE 762
            + N ++I A++D   ++ +R  +H  PEL   E  T   IR  L++ G+  A     TG+   I    SG +  VA+R D+DALP+QE  +   ++S ++G MHACGHD+H ++ +G A   H+ ++   G +R+ FQPAEE    G   +++E  L   +   G H+   I  G   +  G    ++  F V V G   H + PH+ ID I  A++ +  +Q++ISRE
Sbjct:    9 INNSLLIEAERDA--VLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATVFHNTGLYIDIEGSASGPKRAVAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEERLLEGFDNAVGFHVTPSIQVGKFGAREGAVSKSSDQFKVTVSGSAAHGSTPHNGIDAITIAAAFVNEVQKVISRE 235          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_STRTD (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=dapL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.002e-30
Identity = 78/220 (35.45%), Postives = 117/220 (53.18%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKL--GIPYAYPVA-KTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQ 777
            L+ +RR +H+ PE+  EE  T A +   + ++  G  +      +TGI+  + GS     +  R D+D LP+ E    + KS  +G+MHACGHD+H T  LG    + Q + K    +  LFQPAEE  AG   M ++GA GD   +  +G+H+      G IA+ +    A T    V  +G+GGHAA PH   D ++ AS  I  +Q ++SR  DP+Q
Sbjct:    5 LIKIRRDLHQIPEIGLEEFKTQAYLLERIAEMTEGKDFVEQRTWRTGILVFLHGSAPEKTIGWRTDIDGLPIVEETGLDFKSIHEGRMHACGHDIHMTTALGLLDQMLQVQPK--NNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAGTCEVLVTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDPIQ 222          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_STRT2 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dapL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.002e-30
Identity = 78/220 (35.45%), Postives = 117/220 (53.18%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKL--GIPYAYPVA-KTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQ 777
            L+ +RR +H+ PE+  EE  T A +   + ++  G  +      +TGI+  + GS     +  R D+D LP+ E    + KS  +G+MHACGHD+H T  LG    + Q + K    +  LFQPAEE  AG   M ++GA GD   +  +G+H+      G IA+ +    A T    V  +G+GGHAA PH   D ++ AS  I  +Q ++SR  DP+Q
Sbjct:    5 LIKIRRDLHQIPEIGLEEFKTQAYLLERIAEMTEGKDFVEQRTWRTGILVFLHGSAPEKTIGWRTDIDGLPIVEETGLDFKSIHEGRMHACGHDIHMTTALGLLDQMLQVQPK--NNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAGTCEVLVTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDPIQ 222          
The following BLAST results are available for this feature:
BLAST of FC873810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_OCEIH1.811e-3137.39Putative N-acetyldiaminopimelate deacetylase OS=Oc... [more]
DAPL_BACA21.811e-3136.36Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LEUCK4.034e-3137.93Putative N-acetyldiaminopimelate deacetylase OS=Le... [more]
DAPL_GEOTN5.269e-3135.45Putative N-acetyldiaminopimelate deacetylase OS=Ge... [more]
DAPL_BACSU5.269e-3137.00Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACLD5.269e-3135.81Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_STRSV1.174e-3035.87Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
Y4TI_RHISN2.002e-3033.19Uncharacterized hydrolase y4tI OS=Rhizobium sp. (s... [more]
DAPL_STRTD2.002e-3035.45Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRT22.002e-3035.45Putative N-acetyldiaminopimelate deacetylase OS=St... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873810 ID=FC873810; Name=FC873810; organism=Citrus clementina; type=EST; length=791bp
CAACGGATTGTTATTGAGATGGCGATTGCCTTTTTGCTTCTTCTACTACC
GATCACTTATCTCACTACGACCACAGCAGTTGATGAAATACTTACAAATC
AAGTTATGATATCAGCTCAACAAGATAAAGATTGGCTAGTCTCTGTAAGA
AGACAAATCCATGAAAACCCGGAACTGCTATTCGAAGAACACAACACAAG
TGCCCTCATTCGCAGAGAACTTGATAAACTTGGAATCCCTTATGCATACC
CAGTCGCCAAAACAGGCATTGTAGCACAGATTGGCTCTGGTTCTCGCCCT
GTCGTCGCGTTGAGAGCTGACATGGATGCTCTCCCTTTGCAAGAGCTCGT
GGAATGGGAGCATAAGAGCAAAATTGATGGCAAAATGCACGCATGTGGAC
ATGACGTCCACACCACCATGCTTCTTGGTGCTGCCAAGTTGCTTCATCAA
CGTAAAGATAAACTTGAGGGAACTGTGAGAATTCTTTTCCAACCTGCTGA
GGAGGGAGGTGCAGGTGCCTTTCACATGATAAAAGAAGGCGCTCTTGGTG
ACTCTGAAGCAATATTTGGAATGCATATTGACGTAGGAATACCTACAGGA
AGTATAGCATCAATTTCTGGGCCACACTTGGCTGCTACATCCGTTTTTAA
TGTTAAAGTAGAGGGAAGAGGCGGACATGCTGCAATGCCCCATTCAACAA
TCGATCCTATACTTACTGCTTCATCTGTGATATTGGCATTGCAGCAACTT
ATTTCAAGAGAAGCAGATCCCCTCCAAAGTCTAGTATGTCT
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