FC873810

Overview
NameFC873810
Unique NameFC873810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1228 contig Ccv1_Contig1228:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LACRJ (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus reuteri (strain JCM 1112) GN=dapL PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28
Identity = 75/227 (33.04%), Postives = 116/227 (51.10%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTG-------IVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEE---GGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQS 780
            L+ +RR +H+ PEL  +E +T   +   +   G   A+   +T        +V   G   +  +  R D+DALP++E     + S   G MHACGHD+H T+ LG       HQ +D     +   FQPAEE   GG  A+ +         +  +G+H +  +P G+I    G   A T+  N+ + G+GGHAA P +  D ++ A+S+IL +Q +ISR  DP+QS
Sbjct:    7 LIQIRRHLHQIPELALQEFDTHQYLVETI--AGFNQAFLEVRTFKELPTALMVLVHGKNPQRTIGYRTDIDALPVEEQTGLPYSSTHPGVMHACGHDIHMTVALGVLNYFSEHQPQDN----ILFFFQPAEESENGGKRAYELGLFSGKWKPDEFYGLHDNPDLPAGAIGCRMGTLFAGTTEVNIDLNGKGGHAAYPQNANDTVVAAASLILQVQTVISRSIDPIQS 227          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LACRD (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus reuteri (strain DSM 20016) GN=dapL PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28
Identity = 75/227 (33.04%), Postives = 116/227 (51.10%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTG-------IVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEE---GGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQS 780
            L+ +RR +H+ PEL  +E +T   +   +   G   A+   +T        +V   G   +  +  R D+DALP++E     + S   G MHACGHD+H T+ LG       HQ +D     +   FQPAEE   GG  A+ +         +  +G+H +  +P G+I    G   A T+  N+ + G+GGHAA P +  D ++ A+S+IL +Q +ISR  DP+QS
Sbjct:    7 LIQIRRHLHQIPELALQEFDTHQYLVETI--AGFNQAFLEVRTFKELPTALMVLVHGKNPQRTIGYRTDIDALPVEEQTGLPYSSTHPGVMHACGHDIHMTVALGVLNYFSEHQPQDN----ILFFFQPAEESENGGKRAYELGLFSGKWKPDEFYGLHDNPDLPAGAIGCRMGTLFAGTTEVNIDLNGKGGHAAYPQNANDTVVAAASLILQVQTVISRSIDPIQS 227          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: AMHX_BACSU (Amidohydrolase amhX OS=Bacillus subtilis GN=amhX PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28
Identity = 72/199 (36.18%), Postives = 111/199 (55.78%), Query Frame = 1
Query:  115 AQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHI------DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPH 693
            +++ K  ++ +   +H NPE+ ++E+ T++ ++++L+ LG         TG+V +IGSGS PVVA+RAD+DAL       W+  +      H+CGHD H TM LG   LL ++ +  +GT+R +FQPAEE G GA  MI+EG L D + ++G+H+        G    SI   S  H+  T +      G   H A PH
Sbjct:    5 SEEMKQTIMDIFEHLHANPEVSWKEYETTSFLKQKLEDLGCRTRTFSDCTGVVGEIGSGS-PVVAVRADIDAL-------WQEVNGTFRANHSCGHDSHMTMALGTLMLLKKQPELPKGTIRFIFQPAEEKGGGALKMIEEGVLDDIDYLYGVHVRPIQETQNGRCAPSILHGSSQHIEGTII------GEEAHGARPH 189          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LISIN (Putative N-acetyldiaminopimelate deacetylase OS=Listeria innocua GN=dapL PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.300e-28
Identity = 75/220 (34.09%), Postives = 116/220 (52.73%), Query Frame = 1
Query:  139 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYA-YPVAKTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            +++RR +H+ PE  ++E  T A +   + KL   +      +TGI+  + G+     +  R D+DALP+ E      +SK  G MHACGHD+H ++ LG   L H      +  +  +FQPAEEG  GA  +++     +   + I+G+HI      G IA   G   A TS   +  +G+GGHAA PH   D ++ AS+ +  +Q +ISR  DP+ S V
Sbjct:    6 IAIRRDLHQIPETGYKELKTQAYLLDYISKLPNEFLEIKKWRTGILVLVKGTNPGKTIGYRTDIDALPITEETGLPFESKHAGNMHACGHDLHMSIALGV--LTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFSEWRPDTIYGLHIAPEYKVGQIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 223          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_PEDPA (Putative N-acetyldiaminopimelate deacetylase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dapL PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.586e-27
Identity = 78/225 (34.67%), Postives = 114/225 (50.67%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSAL----IRRELDKLGIPYAYPVAKTGIVAQIGSGSRP--VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDS---EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQ 777
            LV +RRQ HE+PEL  +E  T AL    IR     L      P   T ++ ++ +GS P   +  RAD+DALP+ E    +  SK  G MHACGHD+H T+ LG  +    HQ +D L       FQPAEE  +G+          +       +G+H    +P G I    G   A T+  N+K+ G+GGHAA P    D ++  + +I  LQ +++R  +P++
Sbjct:    8 LVRIRRQFHESPELALKEFQTHALLLSVIRSLPQNLLEIKTIPELPTALLVRV-AGSHPHRTIGYRADIDALPVNEKTGLDFASKTPGIMHACGHDIHMTVALGILEYFANHQPQDNL----IFFFQPAEESHSGSVRAFNANIFTNQFRPNEFYGLHSTPTLPAGVIGCRMGTLFAGTTEVNLKLTGKGGHAAYPQDANDMVVAQAYLITQLQTIVARNVNPIE 227          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LACCB (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus casei (strain BL23) GN=dapL PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.586e-27
Identity = 80/229 (34.93%), Postives = 118/229 (51.53%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAY------PVAKTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGAL-GD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            L+++RRQ+H+ PEL  +E  T AL+ + +   G+P  Y      P   T ++ ++ G   +  +  R D+DALP+ E       SK  G  HACGHD+H T+ LG       HQ KD L       FQPAEE   G       GA  GD   +  +G+H    +P G+I++  G   A T+  NV + G+ GHAA+P +  D I+ A+S I  +Q +++R   P  S V
Sbjct:    6 LITLRRQLHQIPELALQEKETHALLLKTIQ--GLPQTYLTIRTLPDLPTALLVKVQGRDPQRTIGYRTDIDALPVTEKTGLPFASKHSGIAHACGHDIHMTVALGILSYFAEHQPKDNLI----FFFQPAEESKNGGKLAYDMGAFTGDWHIDEFYGLHDRPDLPAGTISTRLGTLFAGTTEINVDLIGKSGHAALPQNANDMIVAAASFISQIQTVVARNVGPTDSAV 228          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LACC3 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus casei (strain ATCC 334) GN=dapL PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.586e-27
Identity = 80/229 (34.93%), Postives = 118/229 (51.53%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAY------PVAKTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGAL-GD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            L+++RRQ+H+ PEL  +E  T AL+ + +   G+P  Y      P   T ++ ++ G   +  +  R D+DALP+ E       SK  G  HACGHD+H T+ LG       HQ KD L       FQPAEE   G       GA  GD   +  +G+H    +P G+I++  G   A T+  NV + G+ GHAA+P +  D I+ A+S I  +Q +++R   P  S V
Sbjct:    6 LITLRRQLHQIPELALQEKETHALLLKTIQ--GLPQTYFTIRTLPDLPTALLVKVQGRDPQRTIGYRTDIDALPVTEKTGLPFASKHSGIAHACGHDIHMTVALGILSYFAEHQPKDNLI----FFFQPAEESKNGGKLAYDMGAFTGDWHIDEFYGLHDRPDLPAGTISTRLGTLFAGTTEINVDLIGKSGHAALPQNANDMIVAAASFISQIQTVVARNVGPTDSAV 228          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LISW6 (Putative N-acetyldiaminopimelate deacetylase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dapL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.534e-27
Identity = 79/223 (35.43%), Postives = 119/223 (53.36%), Query Frame = 1
Query:  139 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAK---TGIVAQIGSGSRP--VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIK--EGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV 786
            +++RR +H+ PE  ++E  T A +   + KL  P  +   K   TGI+  +  G++P   +  R D+DALP+ E      +S   G MHACGHD+H ++ LG   L H      +  +  +FQPAEEG  GA  +++  E A    + I+G+HI      G IA   G   A TS   +  +G+GGHAA PH   D ++ AS+ +  +Q +ISR  DP+ S V
Sbjct:    6 IAIRRDLHQIPETGYKELKTQAYLLAYISKL--PNKHLEVKKWRTGILVLV-KGTKPEKTIGYRTDIDALPITEETGLPFESNHVGNMHACGHDLHMSIALGV--LTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAV 223          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: DAPL_LEUMM (Putative N-acetyldiaminopimelate deacetylase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=dapL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.615e-27
Identity = 72/224 (32.14%), Postives = 115/224 (51.34%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDK-----LGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDS---EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQ 777
            L + RR +H+ PEL   E  T   +  ++       + I     +    +V   G+     V  RAD+DALP+ E      +S   G MHACGHDVH ++ LG  +    HQ KD L     + FQPAEE  +G    +  G        +  +G+H    +P G++++++G   A T+   + + G+GGHAA PH   DPI+ ++ +I+ LQ ++SR+ DP++
Sbjct:    8 LKTYRRDLHKIPELALAEFKTHRYLLEKIQSWQTNFMTIRQVEELPTAMLVKFSGTDPSRTVGYRADIDALPVTEDTGLPFESTHKGVMHACGHDVHMSLALGLVQYFSEHQPKDNLI----VFFQPAEESKSGGKLAVDLGIFEGEWHPDEFYGIHDQPNLPAGTLSTLAGTLFAGTAELEIDIHGQGGHAAYPHLGKDPIVISAELIMLLQTVVSRDVDPIE 227          
BLAST of FC873810 vs. ExPASy Swiss-Prot
Match: Y1078_STAES (Uncharacterized hydrolase SE_1078 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1078 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27
Identity = 73/183 (39.89%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  148 RRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDK--LEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA 684
            RR +H+ PEL   E  T++ I   L+ LG+PY  P+ KTG++A +   S   +A RAD+DALP+ E  + + KSK D  MHACGHD HTT L+   K      DK  L   V  +FQPAEE G GA  +IK GA      EA+FG H++     G I        A+ + +   ++G   H A
Sbjct:   11 RRHLHQYPELSLHEFETTSYITSFLEDLGVPYDRPL-KTGVIAYLEGNSHHTIAFRADIDALPIYEENDIDFKSKNDNVMHACGHDGHTTALMLFVKRCKALYDKSELPHNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITASATEYRFFLKGLSSHVA 192          
The following BLAST results are available for this feature:
BLAST of FC873810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_LACRJ7.121e-2833.04Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACRD7.121e-2833.04Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
AMHX_BACSU7.121e-2836.18Amidohydrolase amhX OS=Bacillus subtilis GN=amhX P... [more]
DAPL_LISIN9.300e-2834.09Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_PEDPA1.586e-2734.67Putative N-acetyldiaminopimelate deacetylase OS=Pe... [more]
DAPL_LACCB1.586e-2734.93Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACC31.586e-2734.93Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LISW63.534e-2735.43Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LEUMM4.615e-2732.14Putative N-acetyldiaminopimelate deacetylase OS=Le... [more]
Y1078_STAES7.873e-2739.89Uncharacterized hydrolase SE_1078 OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873810 ID=FC873810; Name=FC873810; organism=Citrus clementina; type=EST; length=791bp
CAACGGATTGTTATTGAGATGGCGATTGCCTTTTTGCTTCTTCTACTACC
GATCACTTATCTCACTACGACCACAGCAGTTGATGAAATACTTACAAATC
AAGTTATGATATCAGCTCAACAAGATAAAGATTGGCTAGTCTCTGTAAGA
AGACAAATCCATGAAAACCCGGAACTGCTATTCGAAGAACACAACACAAG
TGCCCTCATTCGCAGAGAACTTGATAAACTTGGAATCCCTTATGCATACC
CAGTCGCCAAAACAGGCATTGTAGCACAGATTGGCTCTGGTTCTCGCCCT
GTCGTCGCGTTGAGAGCTGACATGGATGCTCTCCCTTTGCAAGAGCTCGT
GGAATGGGAGCATAAGAGCAAAATTGATGGCAAAATGCACGCATGTGGAC
ATGACGTCCACACCACCATGCTTCTTGGTGCTGCCAAGTTGCTTCATCAA
CGTAAAGATAAACTTGAGGGAACTGTGAGAATTCTTTTCCAACCTGCTGA
GGAGGGAGGTGCAGGTGCCTTTCACATGATAAAAGAAGGCGCTCTTGGTG
ACTCTGAAGCAATATTTGGAATGCATATTGACGTAGGAATACCTACAGGA
AGTATAGCATCAATTTCTGGGCCACACTTGGCTGCTACATCCGTTTTTAA
TGTTAAAGTAGAGGGAAGAGGCGGACATGCTGCAATGCCCCATTCAACAA
TCGATCCTATACTTACTGCTTCATCTGTGATATTGGCATTGCAGCAACTT
ATTTCAAGAGAAGCAGATCCCCTCCAAAGTCTAGTATGTCT
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