FC873815

Overview
NameFC873815
Unique NameFC873815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.737e-13
Identity = 58/184 (31.52%), Postives = 87/184 (47.28%), Query Frame = 1
Query:  217 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASG 768
            QK  KA      GTT +  IFK+GV++ AD+RA+ G  ++ ++ +KI  + P +    AG AAD +     +  + RLH     R   V  A  LL   L+SY+G  +S   ++ G D TGP L+ +   G        ++GSGS  A  V ++ YK  ++           I    F D  SG
Sbjct:   27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSG 209          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.963e-13
Identity = 51/181 (28.18%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  229 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGG 771
            +  L    GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D  GP LY V   G        ++GSG   A  +L+  ++ +M++          I      D  SGG
Sbjct:   31 RVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGG 210          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 52/178 (29.21%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  244 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGG 771
            HA+  GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D  GP LY V   G        ++GSG   A  +L+  ++ +M++          I      D  SGG
Sbjct:   34 HARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGG 210          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 52/178 (29.21%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  244 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGG 771
            HA+  GTT    +F++GV++ AD+RA+    ++ +  +KI  I P +    AG AAD +   R       LH L+  R   V   +++L   L+ Y+G  +    ++ G D TGP LY V   G        ++GSG   A  VL+  ++ +M++          I      D  SGG
Sbjct:   34 HARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGY-VGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGG 210          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13
Identity = 57/199 (28.64%), Postives = 94/199 (47.24%), Query Frame = 1
Query:  202 DFDEFQKDT----------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASG 768
            DF+ +Q++           KAT   + GTT +  I K+ +++ AD+RA+ G  I+ ++ KK+  I+P +    AG AAD +F    +     LH L   R+  V  A  +L   L+ Y+G  +    ++ G+D  GP L+ + + G        ++GSGS  A  VL++ Y+ D+            I    F D  SG
Sbjct:   11 DFEYYQRNLLLQEKGFPTPKAT---STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQG-HIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB_STRCO (Proteasome subunit beta OS=Streptomyces coelicolor GN=prcB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.245e-11
Identity = 52/179 (29.05%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  253 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGM---GLSVGTMIAGWD-ETGPG-LYYVDSEGGRLXGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGG 771
            GTT +A  F  GV++A D RA+MG  I+ + ++K+   + Y    +AG A       +   ++    E     ++S+ G +  L+ ++ S  GM   GL+V  + AG+D + G G ++  D  GGR     F + GSGS +A G +   ++ D++           +Y A   D+A+GG
Sbjct:   53 GTTIVAVTFPGGVVLAGDRRATMGNMIAQRDIEKVFPADEYSAVGIAGTAGLAVEMVKLFQLELEHFEKVEGAQLSLEGKANRLSTMIRSNLGMAMQGLAVVPLFAGYDVDRGRGRIFSYDVTGGRSEERHFATTGSGSVFARGAMKKLFRDDLTEEQATTLVVQALYDAADDDSATGG 231          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 49/175 (28.00%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  253 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGV 774
            GT+ +A  FK+GV++ ADSR + G YI+++   K+  ++  +    +G AAD Q     +     L+        + T AS +   + Y  +   L+ G ++AG+D+   G  Y    GG +    +++ GSGS + YG  D  ++ +MS           +  A   D +SGGV
Sbjct:   19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAAS-VFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 191          
The following BLAST results are available for this feature:
BLAST of FC873815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB7A_ARATH1.737e-1331.52Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB10_RAT2.963e-1328.18Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB10_MOUSE3.870e-1329.21Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN3.870e-1329.21Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB7_SCHPO8.622e-1328.64Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSB_STRCO1.245e-1129.05Proteasome subunit beta OS=Streptomyces coelicolor... [more]
PSB6_YEAST1.626e-1128.00Proteasome component PRE3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873815 ID=FC873815; Name=FC873815; organism=Citrus clementina; type=EST; length=800bp
TTTATTTATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTCGCAACTCT
TAGCTACATTGTCGTTTAATCTTAAATTCAGTGCGTAGACATGAAGCTCG
ACACTAGCGGTCTTGAGTCCACTTCTCCATTTTTCGGGTCAGGTGACGAG
CTCTGTCCTGAGTTATTAGCTGCACCATCATTTGCTCTACCTCTTTCTAC
TGATTTTGATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCA
AGGGGACAACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCT
GCTGATTCTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTGTGAA
GAAAATTATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAG
CAGCCGATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTA
CATGAATTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCT
GCTGGCCAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGA
CTATGATTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGAC
AGTGAAGGAGGGAGGCTCANAGGAACACGGTTCTCTGTGGGATCAGGTTC
ACCATATGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTA
TTGAAGAAGCTGCGGAGTTGGCTAGAAGAGCTATTTATCATGCAACATTC
AGAGATGCAGCCAGTGGTGGTGTTGCAAGCGTTTATTATGTGGGACCAAA
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