FC873817

Overview
NameFC873817
Unique NameFC873817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.567e-46
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKMQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.567e-46
Identity = 88/195 (45.13%), Postives = 134/195 (68.72%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPV 723
            ++  +DYLFK++LIGDS VGK+C++  F    Y+++  +TIGVDF +R +E DGK VK+Q+WDTAGQERFRTIT SYYR AH  II YD+T + +F +V  W++EI++Y + N+  +L+GNKCDL +K+ V +E A   A++ G +  +ETSA +S N+++ F+ M  ++  R  S P      P ++ ++  PV
Sbjct:   10 VDENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMAR-HSLPLYGEGAPGSLPLESTPV 203          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 186.037 bits (471), Expect = 2.047e-46
Identity = 96/213 (45.07%), Postives = 142/213 (66.67%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADI-----KNRMASQ--PAMNNARP---PTVQIKGQPVNQKASCCST 750
            ++ EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT + +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL E+  +A  N+  ++ GNK DL   + V+ E  ++ A++ G+ F+ETSA ++ NVE+AF  +  +I     K  +A+Q   A N+A P    T+ +       K +CCS+
Sbjct:    5 VDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAKRACCSS 217          
The following BLAST results are available for this feature:
BLAST of FC873817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_RAT1.200e-4647.42Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT1.200e-4647.42Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB1.200e-4647.42Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG1.200e-4647.42Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE1.200e-4647.42Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN1.200e-4647.42Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CANFA1.200e-4647.42Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_CHICK1.567e-4647.42Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RAB19_BOVIN1.567e-4645.13Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RAA2C_ARATH2.047e-4645.07Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873817 ID=FC873817; Name=FC873817; organism=Citrus clementina; type=EST; length=801bp
CATCATCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTTGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCANAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTG
TGCAGATAAAAGGACAACCGGTGAACCAGAAAGCCAGCTGCTGCTCAACT
TAATCGTTTGTCTTATCCTTCATTGCGTGCATTTGTTTANTGGGTAGCTT
T
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