FC873817

Overview
NameFC873817
Unique NameFC873817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.559e-46
Identity = 93/166 (56.02%), Postives = 118/166 (71.08%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADI 648
            EYDYLFK +LIGDSGVGKS LL+RF  + +     STIGV+F  R +  D K +K QIWDTAGQER+R ITS+YYRGA G +IVYD+T Q SF+NV +WL E+  +A  N+  +LVGNK DL   + VS E A+AFA E  + F+ETSA D+ NVE+AF  +  +I
Sbjct:    6 EYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 93/209 (44.50%), Postives = 140/209 (66.99%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADI-----KNRMASQPAMNNARP-----PTVQIKGQPVNQKASCCS 747
            EY YLFK++LIGDSGVGKS +L RF  + +     STIGV+F  ++++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++SF+NV +WL E+  +A  ++  ++VGNK DL   + VS +  KA A++ G+ F+ETSA +++NVE+AF  +  ++     +  +A++ A   + P      T+ I     N K +CCS
Sbjct:    8 EYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAAGNTKRACCS 216          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 100/213 (46.95%), Postives = 135/213 (63.38%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 744
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA D  NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 96/207 (46.38%), Postives = 127/207 (61.35%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVN--------QKASCCS 747
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  +T + +GK VK QIWDTAGQER+R ITS+YYRGA G +++YDVT   +F N  +WL E+  +   N+  +L+GNKCDL     V  E AKAFA+   + FMETSA D+ NVE AF  +   I   ++ +          +  KG+ +N        ++  CCS
Sbjct:    9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGCCS 215          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45
Identity = 94/211 (44.55%), Postives = 133/211 (63.03%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQP--------------AMNNARPPTVQIKGQPVNQKASCC 744
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT ++ V+ E  + FA E G+ F+ETSA  + NVE+AF+    +I  ++                     NA P TV+       + +SCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM 660
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+ ++ VSYE  + FA E G+ FME SA  + NVE+AF+     I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.733e-45
Identity = 86/169 (50.89%), Postives = 122/169 (72.19%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM 660
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT ++ V+ E  + FA E G+ F+ETSA  + NVE+AF+    +I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.733e-45
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM 660
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+ ++ VSYE  + FA E G+ FME SA  + NVE+AF+     I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.263e-45
Identity = 96/210 (45.71%), Postives = 136/210 (64.76%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPV-----------NQKASCCS 747
            +YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV++WL E+  +A  N+  +LVGNK DL   + V  E A+AF +  G+ F+ETSA +S NVE+AF  +  +I + ++ +   +    P +  +G+ V            +K  CCS
Sbjct:    8 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIG-EGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.041e-45
Identity = 89/198 (44.95%), Postives = 133/198 (67.17%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASC 741
            +YD+LFKL+L+GD+ VGK+C++ RF   ++ +   STIGVDF ++T+E  GK VKLQIWDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GNK DL++ + VS   A++ A+   I   +ETSA DS NVE+AF+ +  ++  R    P  +   P  +Q+  + + +   C
Sbjct:   14 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG-PLFSEKSPDHIQLNSKDIGEGWGC 210          
The following BLAST results are available for this feature:
BLAST of FC873817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT3_SCHPO4.559e-4656.02GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RGP2_ORYSJ5.955e-4644.50Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11A_BOVIN5.955e-4646.95Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAA1A_ARATH5.955e-4646.38Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPTC4_CHLRE1.016e-4544.55GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2A_MAIZE1.327e-4551.48Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
YPTV4_VOLCA1.733e-4550.89GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RAB2B_MAIZE1.733e-4551.48Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
YPTC6_CHLRE2.263e-4545.71Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAB43_HUMAN5.041e-4544.95Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2AF10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873817 ID=FC873817; Name=FC873817; organism=Citrus clementina; type=EST; length=801bp
CATCATCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTTGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCANAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTG
TGCAGATAAAAGGACAACCGGTGAACCAGAAAGCCAGCTGCTGCTCAACT
TAATCGTTTGTCTTATCCTTCATTGCGTGCATTTGTTTANTGGGTAGCTT
T
back to top