FC873817

Overview
NameFC873817
Unique NameFC873817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.568e-25
Identity = 67/172 (38.95%), Postives = 103/172 (59.88%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM--ASQP 672
            +K++++G  GVGKS L ++F   S+++ Y  TI  DF  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ VSY   KA A+E   PFMETSA +  +V++ F    A+I  +M  A+QP
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELF----AEIVRQMNYAAQP 170          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.568e-25
Identity = 67/172 (38.95%), Postives = 103/172 (59.88%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM--ASQP 672
            +K++++G  GVGKS L ++F   S+++ Y  TI  DF  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ VSY   KA A+E   PFMETSA +  +V++ F    A+I  +M  A+QP
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELF----AEIVRQMNYAAQP 170          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 7.568e-25
Identity = 67/206 (32.52%), Postives = 115/206 (55.83%), Query Frame = 1
Query:  157 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKT-VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK--GQPVNQK--ASCC 744
            ++LFK+L+IG+ GVGK+ ++ R+    +   Y +TIGVDF ++ +  D +T V+LQ+WD AGQERF  +T  YY+ A G  +V+D++   +F+ V +W N++D          +  +L+ NKCD       S      F  + G   + ETSA D++N+++A   +   ++N +A+Q +  +      +IK   +P   K  + CC
Sbjct:   21 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFL---VENMLANQQSFPSEEIDLDRIKLVEEPPTTKPRSQCC 223          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB34_HUMAN (Ras-related protein Rab-34 OS=Homo sapiens GN=RAB34 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.686e-24
Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTD--KKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTA 642
            K++++GD  VGK+CL+ RF  D++  +Y +TIGVDF++   E  G    LQ+WDTAGQERF+ I S+YYRGA  IIIV+++ D  S  + KQWL + +      +V   LVG+K DL+   +  +  + A   A E+   +   S+    NV + F  + A
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAA 214          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB32_HUMAN (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.686e-24
Identity = 63/182 (34.62%), Postives = 100/182 (54.95%), Query Frame = 1
Query:  157 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKT-VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNN 684
            ++LFK+L+IG+ GVGK+ ++ R+    +   Y +TIGVDF ++ +  D +T V+LQ+WD AGQERF  +T  YY+ A G  +V+D++   +F  V +W +++D          +  +L+ NKCD       S      F  E G   + ETSA D++N+E+A   +   I     S P   N
Sbjct:   23 EHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNEEN 204          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.202e-24
Identity = 60/162 (37.04%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADI 648
            +KL+++G  GVGKS L ++     ++D Y  TI   ++ +    D + V L + DTAGQE +  +   Y R   G ++VY +    SF  +  + ++I R   S+NV  L+VGNKCDL  ++ VSYE   A A+    PF+ETSA   +NVE+AF  +  +I
Sbjct:    5 YKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNI 165          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.876e-24
Identity = 72/203 (35.47%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT----DKKVVSYETAKAFADE---IGIPFMETSAXDSMNVEQAF-MAMTADIKNRMASQPAMNNA---RPPTVQIKGQPVNQKASCC 744
            K++L+G  GVGK+C + R+ ++ +     STIG  F  + V  +  TV+LQIWDTAGQERFR++   YYR A   I+ YDVT + SF+ +  WL E+ +  S ++   +VG K DL       + V +E    +A E         E SA D   VE+ F + +T  +  R A +   +N+   R   V +      QK+SCC
Sbjct:    7 KIVLLGAQGVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDLVKDEPSLREVPFEQCVEYASEWLQDDSCCHEISAKDDEGVEEVFEVIITKLLDKREADEQQKHNSQRQRQSVVYLHTDEDEQKSSCC 209          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.756e-24
Identity = 69/231 (29.87%), Postives = 115/231 (49.78%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVE---QDGK-----TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTDK--------------------KVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAM--------TADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 747
            FKL+L+GDS VGKS ++ RF  D++ +   STIG  F  +++     DG       +K +IWDTAGQER++++   YYR A+  ++VYD+T ++S    + W++E+ ++   +++   L+GNK DL  +                    + +S E AK +A E G+ F E SA     V++ F  +          +I ++   Q    N     + ++    N   SCCS
Sbjct:    4 FKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQDIGEKLYDLKKDEILSKQNRQIGGGNNGQVDINLQRPSTNDPTSCCS 234          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RASK_RAT (GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 6.407e-24
Identity = 64/183 (34.97%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 711
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL   + V  + A+  A   GIPF+ETSA     VE AF  +  +I+     + +     P  V+IK
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIK 184          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RASK_MOUSE (GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.407e-24
Identity = 64/183 (34.97%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 711
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL   + V  + A+  A   GIPF+ETSA     VE AF  +  +I+     + +     P  V+IK
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIK 184          
The following BLAST results are available for this feature:
BLAST of FC873817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP2B_HUMAN7.568e-2538.95Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG7.568e-2538.95Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
RAB32_MOUSE7.568e-2532.52Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
RAB34_HUMAN1.686e-2439.13Ras-related protein Rab-34 OS=Homo sapiens GN=RAB3... [more]
RAB32_HUMAN1.686e-2434.62Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... [more]
RAS1_CANAL2.202e-2437.04Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RYL2_YARLI2.876e-2435.47Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo... [more]
YPT52_YEAST3.756e-2429.87GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]
RASK_RAT6.407e-2434.97GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3[more]
RASK_MOUSE6.407e-2434.97GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873817 ID=FC873817; Name=FC873817; organism=Citrus clementina; type=EST; length=801bp
CATCATCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTTGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCANAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTG
TGCAGATAAAAGGACAACCGGTGAACCAGAAAGCCAGCTGCTGCTCAACT
TAATCGTTTGTCTTATCCTTCATTGCGTGCATTTGTTTANTGGGTAGCTT
T
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