FC873817

Overview
NameFC873817
Unique NameFC873817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9361 contig Ccv1_Contig9361:26..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.131e-20
Identity = 60/192 (31.25%), Postives = 100/192 (52.08%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKN----RMASQPAMNNARPPTVQIKGQPVNQ 729
            FKL+L+GD G GK+  + R     +   YI+TIGV+    +   +   +K  +WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   EN+  +L GNK D+ ++KV +      F  +  + + + SA  + N E+ F+ +   +         + PA+    PP VQ+  Q ++Q
Sbjct:   14 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL---APPEVQVDEQLMHQ 199          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNR 657
            +KL+++G  GVGKS + ++F    + + +  TI   +KIR +  D +   L I DTAGQ  F  +   Y R   G II Y +TD+ SF+ V+++   I R   +++   +LVGNK DL   + VS E   + A E   PF ETSA     ++  F A+  +I+ +
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVSKEEGLSLAREFSCPFFETSAAYRYYIDDVFHALVREIRKK 185          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNR 657
            +KL+++G  GVGKS + ++F    + + +  TI   +KIR +  D +   L I DTAGQ  F  +   Y R   G II Y +TD+ SF+ V+++   I R   +++   +LVGNK DL   + V+ E   A A E   PF ETSA     ++  F A+  +I+ +
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRK 185          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 57/177 (32.20%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  163 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR 690
            L KL ++GD GVGK+ + ++F  + ++  Y  TI   ++ + +  D +   L I DTAGQ+    +   + R   G I+VY VT + SF+ V+ +  +I R    ++V  +++GNK DL D++ V+++  K  A  +G+ FME SA   +NVE+ F      +K R  S    +N++
Sbjct:   10 LVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCLIDD-QVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEEVFNETVRCVKRREESLLKKDNSK 185          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 60/192 (31.25%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKN----RMASQPAMNNARPPTVQIKGQPVNQ 729
            FKL+L+GD G GK+  + R     +   YI+TIGV+    +   +   +K  +WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   EN+  +L GNK D+ ++KV +      F  +  + + + SA  + N E+ F+ +   +         + PA+    PP VQ+  Q + Q
Sbjct:   13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL---APPEVQVDEQLMQQ 198          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.929e-20
Identity = 56/166 (33.73%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAXDSMNVEQAFMAMTADIKNR 657
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++   VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SA   +NV + F  +   I  +
Sbjct:    4 YKLVVLGSRGVGKSALTVQFVQGIFVEKYDPTIEDSYR-EQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.929e-20
Identity = 54/166 (32.53%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  163 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNR 657
            L KL ++GD GVGK+ + ++F  + ++  Y  TI   ++ + V  D +   L I DTAGQ+    +   + R   G ++VY VT + SF+ +  +  +I+R   S++V  +++GNK DL D++ V+Y+  K  A   G+ FME SA    N+E+ F      +K +
Sbjct:    9 LVKLCIMGDGGVGKTAVTIQFISNHFVHYYDPTIEDSYRKQCVIDD-QVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKRK 173          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.929e-20
Identity = 58/164 (35.37%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  166 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKN 654
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF +V  +  +I R   S++V  +LVGN CDL   + V  + A+  A   GI F+ETSA     VE AF  +  +I++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKDSDDVPMVLVGNICDLA--RTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREIRH 164          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.929e-20
Identity = 55/185 (29.73%), Postives = 98/185 (52.97%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ 705
            E   +FKL+LIGD G GK+ L+ R     +   Y +T+GV+ +      +    ++ +WDTAGQER+  +   Y+  +   II++DV    ++NNVK+W  ++ R    N+  ++ GNK D+  KK  +++    F  +  I  +E SA  + NVE+ F+ +      ++   P++   + P +Q
Sbjct:    6 EVKAIFKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVRVCG-NIPIVICGNKVDIMHKK--TWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLL----RKLVGDPSLQLVQSPAIQ 183          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RASZ_DICDI (Ras-like protein rasZ OS=Dictyostelium discoideum GN=rasZ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.519e-20
Identity = 54/169 (31.95%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  163 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMAS 666
            L +L ++GD GVGK+ + ++F  + ++  Y  TI   ++ + V  D +   L I DTAGQ+    +   + R   G ++VY +T + SF+ V+ +  +I R    ++V  +++GNK DL D++ V+Y+  K  A  +G+ FME SA    N+E+ F      +K R  S
Sbjct:    9 LVRLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCVIDD-QVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSITSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTYQEGKDLARCLGMSFMEVSAKSRANIEEVFNETVRSVKRREES 176          
The following BLAST results are available for this feature:
BLAST of FC873817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP2_YEAST1.131e-2031.25GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
RIT1_MOUSE1.477e-2034.55GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RIT1_HUMAN1.477e-2034.55GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RASY_DICDI1.477e-2032.20Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
GSP1_YEAST1.477e-2031.25GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
RP1BL_HUMAN1.929e-2033.73Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RASX_DICDI1.929e-2032.53Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RASN_DANRE1.929e-2035.37GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]
RANL_DROME1.929e-2029.73GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RASZ_DICDI2.519e-2031.95Ras-like protein rasZ OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873817 ID=FC873817; Name=FC873817; organism=Citrus clementina; type=EST; length=801bp
CATCATCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTTGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCANAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTG
TGCAGATAAAAGGACAACCGGTGAACCAGAAAGCCAGCTGCTGCTCAACT
TAATCGTTTGTCTTATCCTTCATTGCGTGCATTTGTTTANTGGGTAGCTT
T
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