FC873817

Overview
NameFC873817
Unique NameFC873817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.785e-58
Identity = 102/173 (58.96%), Postives = 139/173 (80.35%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+ DK+ VS E  +  A + GI F+ETSA  S NVE+AF  +  DI  ++
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL 173          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.785e-58
Identity = 106/190 (55.79%), Postives = 144/190 (75.79%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 711
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++ ++YISTIG+DFKIRTV+ +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSA  SMNV++AF ++  DI  +   + + N  +PP+  +K
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTDLK 190          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.976e-58
Identity = 107/200 (53.50%), Postives = 146/200 (73.00%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASC 741
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++ ++YISTIG+DFKIRTVE +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSA  SMNV++AF ++  DI  +   + + N+++P +  +K         C
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRSGNHSKPSSTDLKPSDKKNTNKC 200          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.782e-58
Identity = 106/197 (53.81%), Postives = 143/197 (72.59%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 744
            YD L KLLLIGDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT++   + VKLQ+WDTAGQERFRTIT++YYRGA GI++VYDVTD++SFNN++ W   +  YA+E V  +LVGNKCDL +K+VVS E  +A AD+ GIPF+E S+  ++NVE+ F ++   I++ +A     N +    + I     N  + CC
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKG-NESGSGGINIAEGEENSASKCC 203          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.366e-57
Identity = 105/200 (52.50%), Postives = 145/200 (72.50%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASC 741
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++  +YISTIG+DFKIRTVE +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A+  A E  I F ETSA  S+NV++AF ++  DI  +   + + N+++P +  +K         C
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGNSSKPSSTDLKVSDKKNSNKC 200          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.182e-56
Identity = 103/190 (54.21%), Postives = 143/190 (75.26%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 711
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++  +YISTIG+DFKIRTV+ +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A+  A E  I F ETSA  S+NV++AF ++  DI  +   + +  N++P +  +K
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLK 190          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.347e-56
Identity = 108/187 (57.75%), Postives = 145/187 (77.54%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQI 708
            EYDYLFK+++IGDSG GKS LLLRFAD++Y +SY+STIGVDFKI+TV+ D  T+KLQIWDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+GNK DL + +VVS + AK  A++  + ++E SA    NVE+AF  +   +K+++   P  +NA   TV +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP--SNAPASTVSL 187          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.083e-55
Identity = 108/187 (57.75%), Postives = 144/187 (77.01%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQI 708
            EYDYLFK+++IGDSG GKS LLLRFAD++Y +SY+STIGVDFKI+TV+ D  T+KLQIWDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+GNK DL D +VV  + AK  A++  + ++E SA    NVE+AF  +   +K+++   P  +NA   TV +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP--SNAPTSTVNL 187          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.083e-55
Identity = 105/198 (53.03%), Postives = 143/198 (72.22%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADI-KNRMASQPAMNNARPPTVQIKGQPVNQKASCC 744
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK +KLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSA  ++N+E+AF+ +  DI +     +P   N+    +   G     K+ CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEP---NSENVDISSGGGVTGWKSKCC 200          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.083e-55
Identity = 105/198 (53.03%), Postives = 143/198 (72.22%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADI-KNRMASQPAMNNARPPTVQIKGQPVNQKASCC 744
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK +KLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSA  ++N+E+AF+ +  DI +     +P   N+    +   G     K+ CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEP---NSENVDISSGGGVTGWKSKCC 200          
The following BLAST results are available for this feature:
BLAST of FC873817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_HUMAN1.785e-5858.96Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB13_HUMAN1.785e-5855.79Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_MESAU3.976e-5853.50Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RYL1_YARLI6.782e-5853.81Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB13_RAT3.366e-5752.50Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MOUSE2.182e-5654.21Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB1_THEPA6.347e-5657.75Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB1_THEAN1.083e-5557.75Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB10_PONAB1.083e-5553.03Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.083e-5553.03Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873817 ID=FC873817; Name=FC873817; organism=Citrus clementina; type=EST; length=801bp
CATCATCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTTGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCANAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTG
TGCAGATAAAAGGACAACCGGTGAACCAGAAAGCCAGCTGCTGCTCAACT
TAATCGTTTGTCTTATCCTTCATTGCGTGCATTTGTTTANTGGGTAGCTT
T
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