FC873817

Overview
NameFC873817
Unique NameFC873817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 5.205e-50
Identity = 100/229 (43.67%), Postives = 152/229 (66.38%), Query Frame = 1
Query:   73 TPGPISSWTGSIL-REPPQHLIAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQK--ASCCS 747
            TPG +++  G    R PP       +P YD   K++L+GD+GVGK+C L++F D ++L  ++I+T+G+DF+ + V  DG  VKLQIWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+GNK D++ ++V+  E  +  A E G+PF+ETSA   MNVE AF+A+  ++K R   Q     A  P+ QI+    +QK  +SCCS
Sbjct:    4 TPGAVATRDGEAPERSPP------CSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQ-----ADEPSFQIRDYVESQKKRSSCCS 221          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.797e-50
Identity = 90/168 (53.57%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNR 657
            YD + KLLL+GDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK +KLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+E+    LVGNKCD    + VS E  +  A ++ +PF+E SA  + NV+  F  + + I+ +
Sbjct:   11 YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 8.878e-50
Identity = 95/199 (47.74%), Postives = 141/199 (70.85%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMASQPAMNNAR-PPTVQIKGQPVNQKASCC 744
            YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  VKLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T ++VV  E  +  A E G+PFMETSA   +NV+ AF A+  ++K R    P+    R    V+ +G+ V    SCC
Sbjct:   61 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSEPRFRLHDYVKREGRGV----SCC 255          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.374e-49
Identity = 94/173 (54.34%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM 660
            M+ EY++LFK +L GDSGVGK+ +L R  DD++ +++I TIG++FKI+TV  +GK +KLQIWDTAG++RFR + +S+YRG HG+IIVYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL  +KVV    A+ FAD + IPF E SA  S+N+E+AF+++     NR+
Sbjct:    1 MSKEYEHLFKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRI 171          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.374e-49
Identity = 93/201 (46.27%), Postives = 135/201 (67.16%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRM-----ASQPAMNNARPPTVQIKGQPVNQKASC 741
            +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL D++VV  E  +  AD++G  F E SA +++NV+Q F  +   I  +M      S  + +N + P V     P     SC
Sbjct:   19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC 219          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.856e-48
Identity = 90/201 (44.78%), Postives = 140/201 (69.65%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASCC 744
            +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ +++VV  E  +  A+++G  F E SA ++++V QAF  +   I ++M+    + P++  A   T      P+ Q+   C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSMDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.856e-48
Identity = 90/201 (44.78%), Postives = 140/201 (69.65%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASCC 744
            +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ +++VV  E  +  A+++G  F E SA ++++V QAF  +   I ++M+    + P++  A   T      P+ Q+   C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.730e-48
Identity = 97/209 (46.41%), Postives = 139/209 (66.51%), Query Frame = 1
Query:  151 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADI-----KNRMASQPAMNNARPP----TVQIKGQPVNQKASCCST 750
            EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKTVK QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS +   A +++ G+ F+ETSA ++ N+E+AF  +  +I     K  +A+Q A   A  P    T+ +     N K  CCST
Sbjct:    8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.730e-48
Identity = 89/201 (44.28%), Postives = 140/201 (69.65%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASCC 744
            +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ +++V+  E  +  A+++G  F E SA ++++V QAF  +   I ++M+    + P++  A   T      P+ Q+   C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSMDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of FC873817 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.730e-48
Identity = 90/201 (44.78%), Postives = 140/201 (69.65%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAXDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASCC 744
            +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ +++VV  E  +  A+++G  F E SA ++++V QAF  +   I ++M+    + P+M  +   T      P+ Q+   C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC 219          
The following BLAST results are available for this feature:
BLAST of FC873817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB37_HUMAN5.205e-5043.67Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
SEC4_CANAL6.797e-5053.57Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB26_RAT8.878e-5047.74Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RABF1_DICDI3.374e-4954.34Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB3D_HUMAN3.374e-4946.27Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB3B_MOUSE2.856e-4844.78Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU2.856e-4844.78Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RB11C_LOTJA3.730e-4846.41Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB3B_RAT3.730e-4844.28Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3B_HUMAN3.730e-4844.78Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873817 ID=FC873817; Name=FC873817; organism=Citrus clementina; type=EST; length=801bp
CATCATCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTTGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCANAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTG
TGCAGATAAAAGGACAACCGGTGAACCAGAAAGCCAGCTGCTGCTCAACT
TAATCGTTTGTCTTATCCTTCATTGCGTGCATTTGTTTANTGGGTAGCTT
T
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