FC873818

Overview
NameFC873818
Unique NameFC873818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECOLI (Bifunctional protein aas OS=Escherichia coli (strain K12) GN=aas PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECOLC (Bifunctional protein aas OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECOL5 (Bifunctional protein aas OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECOK1 (Bifunctional protein aas OS=Escherichia coli O1:K1 / APEC GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECOHS (Bifunctional protein aas OS=Escherichia coli O9:H4 (strain HS) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECODH (Bifunctional protein aas OS=Escherichia coli (strain K12 / DH10B) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECOBW (Bifunctional protein aas OS=Escherichia coli (strain K12 / BW2952) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECO7I (Bifunctional protein aas OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGSSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECO5E (Bifunctional protein aas OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECO57 (Bifunctional protein aas OS=Escherichia coli O157:H7 GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
The following BLAST results are available for this feature:
BLAST of FC873818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
AAS_ECOLI2.609e-1428.33Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECOLC2.609e-1428.33Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECOL52.609e-1428.33Bifunctional protein aas OS=Escherichia coli O6:K1... [more]
AAS_ECOK12.609e-1428.33Bifunctional protein aas OS=Escherichia coli O1:K1... [more]
AAS_ECOHS2.609e-1428.33Bifunctional protein aas OS=Escherichia coli O9:H4... [more]
AAS_ECODH2.609e-1428.33Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECOBW2.609e-1428.33Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECO7I2.609e-1428.33Bifunctional protein aas OS=Escherichia coli O7:K1... [more]
AAS_ECO5E2.609e-1428.33Bifunctional protein aas OS=Escherichia coli O157:... [more]
AAS_ECO572.609e-1428.33Bifunctional protein aas OS=Escherichia coli O157:... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873818 ID=FC873818; Name=FC873818; organism=Citrus clementina; type=EST; length=788bp
CGATCGATGCCCCTCCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAA
GCAGATGAGGATCAAATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGT
GGCGTTGCCTTTCTCTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGC
TGACGCACAAGAGCTTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAG
AACCCGAATCTTTACTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACC
TTTGTTTCACATTTATTCGTTGAACAGCGTGCTTCTGTGCTCGTTGAGAG
CTGGGGCTGGGGTTCTGTTGATGCAGAAGTTTGAGATAGGGGCGCTGCTG
GAGCTGATACAGCGGCACAGGGTGTCGGTGGCGGCTGTGGTGCCGCCCTT
GGTGCTGGCGCTGGCCAAGAACCCGATGGTGGCGGATTATGACCTGAGCT
CGATCAGGGTGGTGCTTTCCGGGGCGGCGCCGCTGGGGAAGGAGCTTGAA
GATGCTCTCCGAAGTAGAGTCCCTCAAGCAATCTTGGGTCAGGGATATGG
AATGACAGAGGCAGGGCCAGTGCTATCAATGTGCCTAGGATTTGCAAAGC
AGCCATTTCCTACAAAGTCAGGATCATGTGGCACCGTTGTTAGAAATGCT
GAGCTCAAAGTTATTGACCCTGAAACTGGTGCCTCCCTTCCCCACAATCA
ACCTGGCGAAATTTGCATCCGCGGCCCTCAAATTATGAAAGGTTACTTGA
ATGATCCTGAAGGCACTGCGGCAACTATAGACGTTGAG
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