FC873818

Overview
NameFC873818
Unique NameFC873818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECO55 (Bifunctional protein aas OS=Escherichia coli (strain 55989 / EAEC) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECO45 (Bifunctional protein aas OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECO24 (Bifunctional protein aas OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=aas PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SHIFL (Bifunctional protein aas OS=Shigella flexneri GN=aas PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.408e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPDLVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SHIF8 (Bifunctional protein aas OS=Shigella flexneri serotype 5b (strain 8401) GN=aas PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.408e-14
Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPDLVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALTY (Bifunctional protein aas OS=Salmonella typhimurium GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALTI (Bifunctional protein aas OS=Salmonella typhi GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALSV (Bifunctional protein aas OS=Salmonella schwarzengrund (strain CVM19633) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALPK (Bifunctional protein aas OS=Salmonella paratyphi A (strain AKU_12601) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALPC (Bifunctional protein aas OS=Salmonella paratyphi C (strain RKS4594) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDEAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
The following BLAST results are available for this feature:
BLAST of FC873818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
AAS_ECO552.609e-1428.33Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECO452.609e-1428.33Bifunctional protein aas OS=Escherichia coli O45:K... [more]
AAS_ECO242.609e-1428.33Bifunctional protein aas OS=Escherichia coli O139:... [more]
AAS_SHIFL3.408e-1428.33Bifunctional protein aas OS=Shigella flexneri GN=a... [more]
AAS_SHIF83.408e-1428.33Bifunctional protein aas OS=Shigella flexneri sero... [more]
AAS_SALTY4.451e-1428.45Bifunctional protein aas OS=Salmonella typhimurium... [more]
AAS_SALTI4.451e-1428.45Bifunctional protein aas OS=Salmonella typhi GN=aa... [more]
AAS_SALSV4.451e-1428.45Bifunctional protein aas OS=Salmonella schwarzengr... [more]
AAS_SALPK4.451e-1428.45Bifunctional protein aas OS=Salmonella paratyphi A... [more]
AAS_SALPC4.451e-1428.45Bifunctional protein aas OS=Salmonella paratyphi C... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873818 ID=FC873818; Name=FC873818; organism=Citrus clementina; type=EST; length=788bp
CGATCGATGCCCCTCCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAA
GCAGATGAGGATCAAATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGT
GGCGTTGCCTTTCTCTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGC
TGACGCACAAGAGCTTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAG
AACCCGAATCTTTACTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACC
TTTGTTTCACATTTATTCGTTGAACAGCGTGCTTCTGTGCTCGTTGAGAG
CTGGGGCTGGGGTTCTGTTGATGCAGAAGTTTGAGATAGGGGCGCTGCTG
GAGCTGATACAGCGGCACAGGGTGTCGGTGGCGGCTGTGGTGCCGCCCTT
GGTGCTGGCGCTGGCCAAGAACCCGATGGTGGCGGATTATGACCTGAGCT
CGATCAGGGTGGTGCTTTCCGGGGCGGCGCCGCTGGGGAAGGAGCTTGAA
GATGCTCTCCGAAGTAGAGTCCCTCAAGCAATCTTGGGTCAGGGATATGG
AATGACAGAGGCAGGGCCAGTGCTATCAATGTGCCTAGGATTTGCAAAGC
AGCCATTTCCTACAAAGTCAGGATCATGTGGCACCGTTGTTAGAAATGCT
GAGCTCAAAGTTATTGACCCTGAAACTGGTGCCTCCCTTCCCCACAATCA
ACCTGGCGAAATTTGCATCCGCGGCCCTCAAATTATGAAAGGTTACTTGA
ATGATCCTGAAGGCACTGCGGCAACTATAGACGTTGAG
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