FC873818

Overview
NameFC873818
Unique NameFC873818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALPB (Bifunctional protein aas OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALPA (Bifunctional protein aas OS=Salmonella paratyphi A GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALNS (Bifunctional protein aas OS=Salmonella newport (strain SL254) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALHS (Bifunctional protein aas OS=Salmonella heidelberg (strain SL476) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALG2 (Bifunctional protein aas OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALEP (Bifunctional protein aas OS=Salmonella enteritidis PT4 (strain P125109) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALCH (Bifunctional protein aas OS=Salmonella choleraesuis GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDEAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_SALA4 (Bifunctional protein aas OS=Salmonella agona (strain SL483) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P+D   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++     A       G + ++GP IM GYL
Sbjct:  356 RLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIENGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_CITK8 (Bifunctional protein aas OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=aas PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYL 749
            ++ +V  +P++   + F+SG+ G PKGVV +HKSL+ +V Q     +     T  D  +  LPLFH + L   LL  L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L        + +    +L +GYG+TE  PV+S+       P   K G+ G ++   + +++     A    +  G + ++GP IM GYL
Sbjct:  356 RLAQVKQRPEEAAMILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD----FTANDRFMSALPLFHSFGLTVGLLTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFANP----YDFYRLRYVVAGAEKLQDSTRQLWQDKFGLRVL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL-----AVPGIDDGGRLQLKGPNIMNGYL 568
[Close]
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: AAS_ECOL6 (Bifunctional protein aas OS=Escherichia coli O6 GN=aas PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 65/233 (27.90%), Postives = 107/233 (45.92%), Query Frame = 3 
Query:   63 QIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQK---FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPH-NQPGEICIRGPQIMKGYL 749
            ++ ++  +P++   + F+SG+ G PKGVV +HKS++ +V Q     +     T  D  +  LPLFH + L   L   L  GA V L      + I   L   +   V               NP    YD   +R V++GA  L +  +   + +    IL +GYG+TE  PV+S+       P   K G+ G ++   + +++      S+P   + G + ++GP IM GYL
Sbjct:  356 RLAQLKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIAD----FTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANP----YDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTECAPVVSI-----NVPMAAKPGTVGRILPGMDARLL------SVPGIEEGGRLQLKGPNIMNGYL 568
The following BLAST results are available for this feature:
BLAST of FC873818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
AAS_SALPB4.451e-1428.45Bifunctional protein aas OS=Salmonella paratyphi B... [more]
AAS_SALPA4.451e-1428.45Bifunctional protein aas OS=Salmonella paratyphi A... [more]
AAS_SALNS4.451e-1428.45Bifunctional protein aas OS=Salmonella newport (st... [more]
AAS_SALHS4.451e-1428.45Bifunctional protein aas OS=Salmonella heidelberg ... [more]
AAS_SALG24.451e-1428.45Bifunctional protein aas OS=Salmonella gallinarum ... [more]
AAS_SALEP4.451e-1428.45Bifunctional protein aas OS=Salmonella enteritidis... [more]
AAS_SALCH4.451e-1428.45Bifunctional protein aas OS=Salmonella choleraesui... [more]
AAS_SALA44.451e-1428.45Bifunctional protein aas OS=Salmonella agona (stra... [more]
AAS_CITK84.451e-1428.45Bifunctional protein aas OS=Citrobacter koseri (st... [more]
AAS_ECOL65.813e-1427.90Bifunctional protein aas OS=Escherichia coli O6 GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873818 ID=FC873818; Name=FC873818; organism=Citrus clementina; type=EST; length=788bp
CGATCGATGCCCCTCCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAA
GCAGATGAGGATCAAATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGT
GGCGTTGCCTTTCTCTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGC
TGACGCACAAGAGCTTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAG
AACCCGAATCTTTACTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACC
TTTGTTTCACATTTATTCGTTGAACAGCGTGCTTCTGTGCTCGTTGAGAG
CTGGGGCTGGGGTTCTGTTGATGCAGAAGTTTGAGATAGGGGCGCTGCTG
GAGCTGATACAGCGGCACAGGGTGTCGGTGGCGGCTGTGGTGCCGCCCTT
GGTGCTGGCGCTGGCCAAGAACCCGATGGTGGCGGATTATGACCTGAGCT
CGATCAGGGTGGTGCTTTCCGGGGCGGCGCCGCTGGGGAAGGAGCTTGAA
GATGCTCTCCGAAGTAGAGTCCCTCAAGCAATCTTGGGTCAGGGATATGG
AATGACAGAGGCAGGGCCAGTGCTATCAATGTGCCTAGGATTTGCAAAGC
AGCCATTTCCTACAAAGTCAGGATCATGTGGCACCGTTGTTAGAAATGCT
GAGCTCAAAGTTATTGACCCTGAAACTGGTGCCTCCCTTCCCCACAATCA
ACCTGGCGAAATTTGCATCCGCGGCCCTCAAATTATGAAAGGTTACTTGA
ATGATCCTGAAGGCACTGCGGCAACTATAGACGTTGAG
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