FC873818

Overview
NameFC873818
Unique NameFC873818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13595 contig Ccv1_Contig13595:746..1535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_SALA4 (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella agona (strain SL483) GN=caiC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 68/257 (26.46%), Postives = 111/257 (43.19%), Query Frame = 3
Query:   30 HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            HFT L       +    A+  DD   + F+SGTT  PKGVV+TH +L  +           + L + DV + V+P FHI    +  + +  AG+  +L++K+   A  + +++++ +               P         +R V+     L ++ +D    R    +L   YGMTE    +       K+ +P    S G V  + E ++ D +    LP  + GEICI+   G  I K Y   PE TA  ++ E
Sbjct:  152 HFTQLQSRQSTTLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHIDCQCTAAMPAFSAGSTFVLLEKYSARAFWDQVRKYQATVTECIPMMIRTLMVQPAAPTDRQHHLREVMF-YLNLSEQEKDDFTERFGVRLL-TSYGMTETIVGIIGDRPGDKRRWP----SIGRVGFSYEAEIRD-DQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATARALEPE 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_ECOUT (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 66/241 (27.39%), Postives = 106/241 (43.98%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI    +  + +  AGA  +L++K+   A    +Q++R +               P  A+     +R V+     L ++ +DA   R    +L   YGMTE   G +        + P   ++G C      AE++    +    LP  + GEICI+   G  I K Y  +P+ TA  ++ +
Sbjct:  170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMF-YLNLSEQEKDAFCERFGVRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRAGFC----YEAEIR---DDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEAD 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSM (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 66/241 (27.39%), Postives = 105/241 (43.57%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI    +  + +  AGA  +L++K+   A    +Q++R +               P  A+     +R V+     L  + +DA   R    +L   YGMTE   G +        + P   ++G C      AE++    +    LP  + GEICI+   G  I K Y  +P+ TA  ++ +
Sbjct:  170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDQQHRLREVMF-YLNLSAQEKDAFCERFGVRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRAGFC----YEAEIR---DDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEAD 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_ECOK1 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O1:K1 / APEC GN=caiC PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 66/241 (27.39%), Postives = 106/241 (43.98%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI    +  + +  AGA  +L++K+   A    +Q++R +               P  A+     +R V+     L ++ +DA   R    +L   YGMTE   G +        + P   ++G C      AE++    +    LP  + GEICI+   G  I K Y  +P+ TA  ++ +
Sbjct:  170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMF-YLNLSEQEKDAFCERFGVRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRAGFC----YEAEIR---DDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEAD 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 66/241 (27.39%), Postives = 106/241 (43.98%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI    +  + +  AGA  +L++K+   A    +Q++R +               P  A+     +R V+     L ++ +DA   R    +L   YGMTE   G +        + P   ++G C      AE++    +    LP  + GEICI+   G  I K Y  +P+ TA  ++ +
Sbjct:  170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMF-YLNLSEQEKDAFCERFGVRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRAGFC----YEAEIR---DDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEAD 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_ECO8A (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O8 (strain IAI1) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 66/241 (27.39%), Postives = 106/241 (43.98%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI    +  + +  AGA  +L++K+   A    +Q++R +               P  A+     +R V+     L ++ +DA   R    +L   YGMTE   G +        + P   ++G C      AE++    +    LP  + GEICI+   G  I K Y  +P+ TA  ++ +
Sbjct:  170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMF-YLNLSEQEKDAFCERFGVRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRAGFC----YEAEIR---DDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEAD 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_ECO7I (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 66/241 (27.39%), Postives = 105/241 (43.57%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI    +  + +  AGA  +L++K+   A    +Q++R +               P  A+     +R V+     L  + +DA   R    +L   YGMTE   G +        + P   ++G C      AE++    +    LP  + GEICI+   G  I K Y  +P+ TA  ++ +
Sbjct:  170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDQQHRLREVMF-YLNLSAQEKDAFCERFGVRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRAGFC----YEAEIR---DDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEAD 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 66/241 (27.39%), Postives = 109/241 (45.23%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA-GPVLSMCLGFAKQ-PFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + F+SGTT  PKGVV+TH +L  +             L + +V L V+P FHI    +  + +  AGA  +L++K+   A    +Q++R +               P  A+     +R V+     L ++ +DA   R    +L   YGMTE    ++   LG  ++ P   ++G C      AE++    +    LP  + GEICI+   G  I K Y  +P+ TA  ++ +
Sbjct:  170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDEVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMIIRTLMVQPPSANDRQHRLREVMF-YLNLSEQEKDAFCERFGVRLL-TSYGMTETIVGIIGDRLGDKRRWPSIGRAGFC----YEAEIR---DDHNRPLPAGEIGEICIKGVLGKTIFKEYFLNPKATAKVLEAD 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 66/238 (27.73%), Postives = 105/238 (44.12%), Query Frame = 3
Query:   90 DDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATIDVE 788
            DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI    +  + +  AGA  +L++K+   A    +Q++R +               P  A+     +R V+     L ++ +DA   R    +L   YGMTE   G +        + P   ++G C      AE++    +    LP  + GEICI+   G  I K Y  +P+ TA  ++ +
Sbjct:  173 DDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMF-YLNLSEQEKDAFCERFGVRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRAGFC----YEAEIR---DDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEAD 397          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: CAIC_CITK8 (Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 75/270 (27.78%), Postives = 116/270 (42.96%), Query Frame = 3
Query:    6 DAPPE-NCLHFTVLSEADEDQIPEVA-----IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTE--AGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIR---GPQIMKGYLNDPEGTAATID 782
            +AP E N  HF+ L    +DQ P        +  DD   + F+SGTT  PKGVV+TH +L  +        +    L   DV L V+P FHI    +  + +  AG+  +L++K+   A    ++++R +               P   +     +R V+     L  + +DA  +R    +L   YGMTE   G +        + P   + G C      A+++    E   SLP  + GEICI+   G  I K Y   PE TA  ++
Sbjct:  143 NAPVEDNVSHFSQL----KDQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYY----SSWQCALREDDVYLTVMPAFHIDCQCTAAMAAFSAGSTFVLIEKYSARAFWGQVRKYRATVTECIPMMIRTLMVQPASPEERQHCLREVMF-YLNLSVQEKDAFIARFGVRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRPGFC----YEADIR---DEQNRSLPAGEIGEICIKGVPGKTIFKEYYARPEATAKALE 395          
The following BLAST results are available for this feature:
BLAST of FC873818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
CAIC_SALA44.606e-1126.46Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_ECOUT4.606e-1127.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOSM4.606e-1127.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOK14.606e-1127.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOHS4.606e-1127.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO8A4.606e-1127.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO7I4.606e-1127.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SHIDS6.015e-1127.39Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOSE6.015e-1127.73Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_CITK87.856e-1127.78Probable crotonobetaine/carnitine-CoA ligase OS=Ci... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873818 ID=FC873818; Name=FC873818; organism=Citrus clementina; type=EST; length=788bp
CGATCGATGCCCCTCCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAA
GCAGATGAGGATCAAATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGT
GGCGTTGCCTTTCTCTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGC
TGACGCACAAGAGCTTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAG
AACCCGAATCTTTACTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACC
TTTGTTTCACATTTATTCGTTGAACAGCGTGCTTCTGTGCTCGTTGAGAG
CTGGGGCTGGGGTTCTGTTGATGCAGAAGTTTGAGATAGGGGCGCTGCTG
GAGCTGATACAGCGGCACAGGGTGTCGGTGGCGGCTGTGGTGCCGCCCTT
GGTGCTGGCGCTGGCCAAGAACCCGATGGTGGCGGATTATGACCTGAGCT
CGATCAGGGTGGTGCTTTCCGGGGCGGCGCCGCTGGGGAAGGAGCTTGAA
GATGCTCTCCGAAGTAGAGTCCCTCAAGCAATCTTGGGTCAGGGATATGG
AATGACAGAGGCAGGGCCAGTGCTATCAATGTGCCTAGGATTTGCAAAGC
AGCCATTTCCTACAAAGTCAGGATCATGTGGCACCGTTGTTAGAAATGCT
GAGCTCAAAGTTATTGACCCTGAAACTGGTGCCTCCCTTCCCCACAATCA
ACCTGGCGAAATTTGCATCCGCGGCCCTCAAATTATGAAAGGTTACTTGA
ATGATCCTGAAGGCACTGCGGCAACTATAGACGTTGAG
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