FC873818

Overview
NameFC873818
Unique NameFC873818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.989e-30
Identity = 70/238 (29.41%), Postives = 128/238 (53.78%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNP--MVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + +SSGTTG  KGV+ +H++L   VA+ +        L   D+ +C +P+FH Y L +  + ++  G+ V+++++F++  +++ +++HR +              +   + A YDLSS++ V  G APL KE+ +    + P   + QGY +TE+    +      +     + G+ GT+  + E +++DP TG  +  NQ GE+ ++GP I KGY  + E T  TI++E
Sbjct:  194 VNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDN-----LKRDDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFTNSAEES---RRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEATNETINLE 423          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.683e-29
Identity = 69/238 (28.99%), Postives = 130/238 (54.62%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXK--NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATIDVE 788
            +  DD   + +SSGTTG  KGV+ +H++L   VA+ +D +         ++ +C +P+FH + L +  + S+ +G+ V+++++F +  +++ +++++ +                + + A YDL+S+R V  G APL KE+ D+   + P   + QGY +TE+    +      +     K G+ G +    E +++DP+TG  +  NQPGE+ ++GP I KGY  + E T  TI++E
Sbjct:  196 VNQDDTAMMLYSSGTTGTSKGVISSHRNLTAYVAKYIDDK-----WKRDEIFVCTVPMFHSFGLLAFAMGSVASGSTVVILRRFGLDDMMQAVEKYKATILSLAPPVLVAMINGADQLKAKYDLTSLRKVRCGGAPLSKEVMDSFLEKYPTVNIFQGYALTESHGSGASTESVEES---LKYGAVGLLSSGIEARIVDPDTGRVMGVNQPGELWLKGPSISKGYFGNEEATNETINLE 425          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPY (Luciferin 4-monooxygenase OS=Photinus pyralis PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.898e-29
Identity = 85/245 (34.69%), Postives = 128/245 (52.24%), Query Frame = 3
Query:   60 DQIPEVAIKPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATID 782
            D +PE +   D  +AL   SSG+TGLPKGV L H++     +   D    N  + +   +L V+P  H   +++    L+C  R    V+LM +FE    L  +Q +++              K+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +      +P     G+ G VV   E KV+D +TG +L  NQ GE+C+RGP IM GY+N+PE T A ID
Sbjct:  180 DFVPE-SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD-TAILSVVPFHHGFGMFTTLGYLICGFR----VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID 413          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.397e-29
Identity = 77/244 (31.56%), Postives = 127/244 (52.05%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQV------DGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXK--NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATIDVE 788
            +  DD   L +SSGTTG+ KGV+ +H++LI  V   V      DGE            +C +P+FHIY L +     L  G+ ++++ KFE+  ++  I +++ +                + + A YDLSS+  VL G APL KE+ +    + P   + QGYG+TE+  + +      +     + G+ G +  + E +++DP TG  L   Q GE+ ++GP IMKGY ++ E T++T+D E
Sbjct:  186 VDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQR---------FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVEES---RRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDSE 417          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LUCI_LUCCR (Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 79/228 (34.65%), Postives = 124/228 (54.39%), Query Frame = 3
Query:  114 SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFH---IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATIDVE 788
            SSG+TGLPKGV LTH++ +T  +   D    N  ++ G  VL V+P  H   +++    L+C  R    V+++ KF+    L+ +Q ++ +             K+ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +      +P     G+ G VV   + KVID +T  SL  N+ GE+C++GP +MKGY+N+PE T   ID E
Sbjct:  200 SSGSTGLPKGVQLTHENTVTRFSHARDPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFR----VVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEE 417          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL6_ORYSJ (4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.415e-28
Identity = 84/254 (33.07%), Postives = 126/254 (49.61%), Query Frame = 3
Query:   69 PEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVA------QQVDGEN----------PNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEA-GPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATI 779
            P VA+K     AL +SSGTTG  K V +TH++LI  ++      + V  E           P        V L  LPLFH+     +L  ++ +G   ++M++F++ A    ++R+RV+             K+      DLSS+  ++ G APLG+E+     +  P   + Q YG+TE+ GPV +M    A        GS G +    + K++D  TG  L   + GE+ IRGP +MKGY+ DPE TAATI
Sbjct:  217 PAVAMKQPSTAALLYSSGTTGRVKAVAITHRNLIAQISAYNAIRETVAREAATDAGKGKPPPPSPSPPAAVTLFPLPLFHVMGFG-LLTRTISSGETAVVMRRFDLAAAARAVERYRVTKLSAAPPVVVALTKSDEARRRDLSSLVAIVVGGAPLGREVSQRFATVFPSVQIVQSYGLTESTGPVATM----AGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRGPVVMKGYVGDPEATAATI 465          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.237e-28
Identity = 79/238 (33.19%), Postives = 126/238 (52.94%), Query Frame = 3
Query:   81 IKPDDPVA-LPFSSGTTGLPKGVVLTHKSLITSV----AQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATI 779
            I P+  +A L ++ GTTG PKGV+LTH++++ +     A   D +         + VL ++P FH+Y L +V+  S++ G  ++L+ KF+    L++I +H+ +              +P +  YDLSSI+  LSG+A L  E++     +V    L +GYG++EA PV      + K     K GS G    + +  +   ETG      + GEI ++GPQ+MKGY N PE TAA +
Sbjct:  202 IDPEHDIAVLQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKE------GAEKVLGIVPFFHVYGLTAVMNYSIKLGFEMILLPKFDPLETLKIIDKHKPTLFPGAPTIYIGLLHHPELQHYDLSSIKSCLSGSAALPVEVKQKF-EKVTGGKLVEGYGLSEASPVTHANFIWGK----NKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKGPQVMKGYWNKPEETAAVL 428          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.058e-27
Identity = 83/243 (34.16%), Postives = 127/243 (52.26%), Query Frame = 3
Query:   45 SEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFP--TKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGT 767
            S A ++Q P     PDD   + ++SGTTG PKG +LTH++L ++ A  V G    L +   D V+C LP+FH++ L   +   L +GA VL+  +F   ++ +L+++ + +             ++      D SSIR+ +SG A +   L  A   +    IL +GYG++EA PV          PF    K GS GT + + E KV+DP  G  LP +Q GE+ ++GP +MKGY   P  T
Sbjct:  157 SAAKQNQEPV----PDDTAVILYTSGTTGKPKGAMLTHQNLYSN-ANDVAG---YLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGATVLIEPQFSPASVFKLVKQQQATIFAGVPTMYNYLFQHENGKKDDFSSIRLCISGGASMPVALLTAFEEKFGVTIL-EGYGLSEASPVTCF------NPFDRGRKPGSIGTSILHVENKVVDP-LGRELPAHQVGELIVKGPNVMKGYYKMPMET 383          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LUCI_LUCLA (Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.688e-27
Identity = 79/239 (33.05%), Postives = 129/239 (53.97%), Query Frame = 3
Query:   75 VAIKPDDPVALPF-SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATIDVE 788
            V +   + VAL   SSG+TGLPKGV LTH++ +T  +   D    N  ++ G  +L V+P  H + + + L   L  G  ++++ KF+    L+ +Q ++ S             ++ ++  YDLS++  + SG APL KE+ +A+  R     + QGYG+TE    + +      +P     G+ G VV   + KVID +T  +L  N+ GE+C++GP +MKGY+++PE T   ID E
Sbjct:  186 VEVNRKEQVALIMNSSGSTGLPKGVQLTHENAVTRFSHARDPIYGN-QVSPGTAILTVVPFHHGFGMFTTL-GYLTCGFRIVMLTKFDEETFLKTLQDYKCSSVILVPTLFAILNRSELLDKYDLSNLVEIASGGAPLSKEIGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKTLGPNRRGEVCVKGPMLMKGYVDNPEATREIIDEE 417          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPE (Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.510e-27
Identity = 80/232 (34.48%), Postives = 118/232 (50.86%), Query Frame = 3
Query:   90 DDPVALP-FSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATID 782
            DD VAL  FSSGTTG+ KGV+LTHK+++   +   D    N  +     +L V+P  H + + + L      G  V LM  FE    L+ +Q ++V              K+ +V  YDLS ++ + SG APL KE+ + ++ R     + QGYG+TE    + +      +P     GS G +V    +KV+DP TG  L  N+ GE+  +G  IMK Y N+ E T A I+
Sbjct:  188 DDQVALVMFSSGTTGVSKGVMLTHKNIVARFSHCKDPTFGNA-INPTTAILTVIPFHHGFGMTTTL-GYFTCGFRVALMHTFEEKLFLQSLQDYKVESTLLVPTLMAFFPKSALVEKYDLSHLKEIASGGAPLSKEIGEMVKKRFKLNFVRQGYGLTETTSAVLITPDTDVRP-----GSTGKIVPFHAVKVVDPTTGKILGPNETGELYFKGDMIMKSYYNNEEATKAIIN 412          
The following BLAST results are available for this feature:
BLAST of FC873818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
4CLL4_ARATH1.989e-3029.414-coumarate--CoA ligase-like 4 OS=Arabidopsis thal... [more]
4CLL3_ARATH1.683e-2928.994-coumarate--CoA ligase-like 3 OS=Arabidopsis thal... [more]
LUCI_PHOPY4.898e-2934.69Luciferin 4-monooxygenase OS=Photinus pyralis PE=1... [more]
4CLL5_ARATH6.397e-2931.564-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]
LUCI_LUCCR3.175e-2834.65Luciferin 4-monooxygenase OS=Luciola cruciata PE=1... [more]
4CLL6_ORYSJ5.415e-2833.074-coumarate--CoA ligase-like 6 OS=Oryza sativa sub... [more]
LCFA_BACSU9.237e-2833.19Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
LCFB_BACSU2.058e-2734.16Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
LUCI_LUCLA2.688e-2733.05Luciferin 4-monooxygenase OS=Luciola lateralis PE=... [more]
LUCI_PHOPE3.510e-2734.48Luciferin 4-monooxygenase OS=Photuris pennsylvanic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873818 ID=FC873818; Name=FC873818; organism=Citrus clementina; type=EST; length=788bp
CGATCGATGCCCCTCCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAA
GCAGATGAGGATCAAATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGT
GGCGTTGCCTTTCTCTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGC
TGACGCACAAGAGCTTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAG
AACCCGAATCTTTACTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACC
TTTGTTTCACATTTATTCGTTGAACAGCGTGCTTCTGTGCTCGTTGAGAG
CTGGGGCTGGGGTTCTGTTGATGCAGAAGTTTGAGATAGGGGCGCTGCTG
GAGCTGATACAGCGGCACAGGGTGTCGGTGGCGGCTGTGGTGCCGCCCTT
GGTGCTGGCGCTGGCCAAGAACCCGATGGTGGCGGATTATGACCTGAGCT
CGATCAGGGTGGTGCTTTCCGGGGCGGCGCCGCTGGGGAAGGAGCTTGAA
GATGCTCTCCGAAGTAGAGTCCCTCAAGCAATCTTGGGTCAGGGATATGG
AATGACAGAGGCAGGGCCAGTGCTATCAATGTGCCTAGGATTTGCAAAGC
AGCCATTTCCTACAAAGTCAGGATCATGTGGCACCGTTGTTAGAAATGCT
GAGCTCAAAGTTATTGACCCTGAAACTGGTGCCTCCCTTCCCCACAATCA
ACCTGGCGAAATTTGCATCCGCGGCCCTCAAATTATGAAAGGTTACTTGA
ATGATCCTGAAGGCACTGCGGCAACTATAGACGTTGAG
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