FC873818

Overview
NameFC873818
Unique NameFC873818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LUCI_LUCMI (Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.971e-26
Identity = 75/225 (33.33%), Postives = 119/225 (52.89%), Query Frame = 3
Query:  114 SSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATIDVE 788
            SSG+TGLPKGV +TH+  +T  +   D    N  ++ G  +L V+P  H + + + L      G  V+++ KF+    L  +Q ++ +             K+ ++  +DLS++  + SG APL KE+ +A+  R     + QGYG+TE      +      +P     G+ G VV   ++KVID +T  +L  N+ GEIC++GP +M GY N+PE T  TID E
Sbjct:  200 SSGSTGLPKGVRITHEGAVTRFSHAKDPIYGN-QVSPGTAILTVVPFHHGFGMFTTL-GYFACGYRVVMLTKFDEELFLRTLQDYKCTSVILVPTLFAILNKSELIDKFDLSNLTEIASGGAPLAKEVGEAVARRFNLPGVRQGYGLTETTSAFIITPEGDDKP-----GASGKVVPLFKVKVIDLDTKKTLGVNRRGEICVKGPSLMLGYSNNPEATRETIDEE 417          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL8_ARATH (4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 67/231 (29.00%), Postives = 115/231 (49.78%), Query Frame = 3
Query:   81 IKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDG--ENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXK--NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPE 761
            +  DD   L +SSGTTG  KGV  +H +LI  VA+ +    E P          +C +PLFH + L + +L +L  G  V+++ +F++G ++  ++++R +                + ++  YD+S +R V  G APL KE+      + P   + QGY +TE+    +      +     + G+ G +    E +++DP TG  +  NQ GE+ ++GP I KGY  + E
Sbjct:  196 VHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIAEPFEQPQ------QTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGASIESVEES---RRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRNEE 417          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL8_ORYSJ (Putative 4-coumarate--CoA ligase-like 8 OS=Oryza sativa subsp. japonica GN=4CLL8 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.744e-24
Identity = 87/305 (28.52%), Postives = 133/305 (43.61%), Query Frame = 3
Query:   39 VLSEADEDQ---IPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQV--------DGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGA-GVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSS------------IRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMC------LGFAKQPFPTKSG----------------------------SCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATI 779
            V +E D+D+   +P   I  DD   L +SSGTTG  KGVV TH + I   A            GE P  Y  + +   CVLP+FH++  +S ++ +   GA  V++  +F +   +  ++ + V+               PMV     ++            +R V+S  APL +E     RS  P   LGQ YG+TE   +++MC       G  K   P  S                             S G ++ + E K++DP++G  LP  + GE+ +RGP  M+GYLN+ E TA  +
Sbjct:  166 VAAEVDDDETLDLPAANIGRDDAALLFYSSGTTGRSKGVVSTHGNAIAMAASLERAWGGGGGGGEKPQQYDDHDEAYGCVLPMFHMFGFSSFVMGTAALGATAVVVPGRFSVEKTMAAVEEYGVTRLLVVP---------PMVVKMVAAAAGDGEPSRRRLRLRQVVSSGAPLQREHMARFRSCFPAVNLGQCYGLTETTGIVTMCDLQHNDNGIDKVEMPPSSTDMTFVAVAATTTEVKERSTGGGGGGGGVSIGRLMPDVEAKIVDPDSGELLPPRRTGELWVRGPSTMRGYLNNEEATALAL 461          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL2_ORYSJ (4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 84/253 (33.20%), Postives = 122/253 (48.22%), Query Frame = 3
Query:   33 FTVLSEADEDQIPE--VAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGD-VVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXK-NPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK------GYLNDPE 761
            F  L E D +   E  V +  DD  A+ +SSGT+G  KGVV+TH++LI  V   V  E         D V L  LP+FH+Y L+   +  L  G  V++M++F +   ++ I++++V+             + NP +   +L S+  V SGAAPL   L        P     QGYGMTE+  V +      K     K  S G +  N   K++  E+G+ LP    GE+ + GP IMK      GYLND +
Sbjct:  178 FHALLETDPETPVEMGVGVGQDDAAAVLYSSGTSGRSKGVVVTHRNLIAMVELFVRFEASQYTRPARDNVYLAALPMFHVYGLSLFAVGLLSLGCTVVVMRRFNVDDAVKAIRKYKVTHLPLVPPIMSALLRANPPL---ELDSLLQVSSGAAPLNHTLIHHFLHAFPHVDFIQGYGMTESTAVGTRGFNTCKH---KKYASVGLLAPNMHAKIVHLESGSCLPPGSYGELWLHGPAIMKEFCFVTGYLNDDD 424          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: YNGI_BACSU (Putative acyl-CoA synthetase yngI OS=Bacillus subtilis GN=yngI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.803e-23
Identity = 63/235 (26.81%), Postives = 118/235 (50.21%), Query Frame = 3
Query:   78 AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATID 782
            ++  D+ + + ++SGTTG PKGV+LTH ++I + A   +     + LT+ D +   +P FH +     +L  +  GA ++ +Q+F+   +L+ +++ + +              +P    YDLS++R  +   +P   E+  A+  R+    +   YG TEA PV++     A   F  +  + G  + + E+K+++P T   +     GE+C RG  +MKGY  D + T   I+
Sbjct:  186 SLDKDNVINMQYTSGTTGFPKGVMLTHFNVINNAANIAEC----MALTSQDRMCIPVPFFHCFGCVLGVLACVSVGAAMIPVQEFDPVTVLKTVEKEKCTVLHGVPTMFIAELHHPDFDAYDLSTLRTGIMAGSPCPSEVMKAVIERMGMKDITIAYGQTEASPVITQTR--ANDSFIRRVETTGRALPHTEVKIVEPGTCQEVQRGMQGELCTRGYHVMKGYYKDKDATRKAIN 414          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL5_ORYSJ (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.075e-23
Identity = 81/251 (32.27%), Postives = 119/251 (47.41%), Query Frame = 3
Query:   75 VAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVD------------GENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKS-GSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATIDVE 788
            VA+K  D  A+ +SSGTTG  K V +TH++LI  ++   D            GE P        V L  +PLFH++    VL  S+  G   +LM++F+  A L  I+R+RV+             K       DLSS+ V+  G APLG+E+ +   S  P   L QGYG+TE+   ++  +G    P  +K+ GS G +  + + K++DP T                     GY+ D E TAAT+D E
Sbjct:  191 VAVKQSDTAAVLYSSGTTGRVKAVAITHRNLIALMSLHADNREKVAREAAEAGEEP----PPPAVTLLPIPLFHVFGFMMVLR-SVSMGETSVLMERFDFIAALRAIERYRVTLLPAAPPVLVAMVKYEEARRRDLSSLLVIGIGGAPLGREVAEQFASVFPNVELVQGYGLTESSGAVAATVG----PEESKAYGSVGKLGSHLQAKIVDPST---------------------GYVGDDEATAATVDSE 411          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.799e-22
Identity = 77/250 (30.80%), Postives = 117/250 (46.80%), Query Frame = 3
Query:   48 EADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNG--DVVLCVLPLFHIYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPM---VADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATID 782
            +  E  +P V    DD VA+ +SSGT+G  KGVVLTH++LI      V  E    +      +V +  LP+ H+Y L+   +  L  GA V++M++F+ G  +  I R++V+             +      V    ++S+  V  GAAP+   L        P     QGYGMTE+  V +     +K     K  S G +  N   K++  E+ + LP    GE+ + GP IMKGYL+D +      D
Sbjct:  208 DGTETAVPVVG--QDDAVAILYSSGTSGRSKGVVLTHRNLIAMTELFVRFEASQYHARGARENVYMAALPMSHVYGLSLFAVGLLSIGATVVVMRRFDAGDAVAAIGRYKVTHMPLVPPIMAAMVRAAAAGGVPPSQVASLVQVSCGAAPITAALIHEFLQAFPHVDFIQGYGMTESTAVGTRGFNTSKHK---KYTSVGLLAPNMHAKIVHLESSSCLPPGFSGELWLHGPGIMKGYLSDDDDACTRKD 452          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 67/231 (29.00%), Postives = 119/231 (51.52%), Query Frame = 3
Query:   87 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL--NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGT 767
            P+D   L ++ GTTG+ KG +LTH++++ ++ +QV+     L     ++V+  LPL+HI++L  N +L   L  G  +L+    +I  L++ + ++  +              N      D SS+ +   G  P+ + + +       Q +L +GYG+TE  P++S+       P+     SGS G  V + E K++D +    +P  QPGE+C++GPQ+M GY   P+ T
Sbjct:  205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANL-EQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIEL-GGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLL-EGYGLTECAPLVSV------NPYDIDYHSGSIGLPVPSTEAKLVDDDDN-EVPPGQPGELCVKGPQVMLGYWQRPDAT 425          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 67/231 (29.00%), Postives = 119/231 (51.52%), Query Frame = 3
Query:   87 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL--NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGT 767
            P+D   L ++ GTTG+ KG +LTH++++ ++ +QV+     L     ++V+  LPL+HI++L  N +L   L  G  +L+    +I  L++ + ++  +              N      D SS+ +   G  P+ + + +       Q +L +GYG+TE  P++S+       P+     SGS G  V + E K++D +    +P  QPGE+C++GPQ+M GY   P+ T
Sbjct:  205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANL-EQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIEL-GGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLL-EGYGLTECAPLVSV------NPYDIDYHSGSIGLPVPSTEAKLVDDDDN-EVPPGQPGELCVKGPQVMLGYWQRPDAT 425          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.892e-22
Identity = 68/231 (29.44%), Postives = 118/231 (51.08%), Query Frame = 3
Query:   87 PDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL--NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGT 767
            P+D   L ++ GTTG+ KG +LTH++++ ++ +QV+     L     ++V+  LPL+HI++L  N +L   L  G  +L+    +I  L++ + ++  +              N      D SS+ +   G  P+ + + +       Q +L +GYG+TE  P++S+       P+     SGS G  V + E K++D +     P  QPGE+C+RGPQ+M GY   P+ T
Sbjct:  205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANL-EQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIEL-GGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLL-EGYGLTECAPLVSV------NPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVSP-GQPGELCVRGPQVMLGYWQRPDAT 425          
The following BLAST results are available for this feature:
BLAST of FC873818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
LUCI_LUCMI2.971e-2633.33Luciferin 4-monooxygenase OS=Luciola mingrelica PE... [more]
4CLL8_ARATH7.319e-2529.004-coumarate--CoA ligase-like 8 OS=Arabidopsis thal... [more]
4CLL8_ORYSJ4.744e-2428.52Putative 4-coumarate--CoA ligase-like 8 OS=Oryza s... [more]
4CLL2_ORYSJ1.380e-2333.204-coumarate--CoA ligase-like 2 OS=Oryza sativa sub... [more]
YNGI_BACSU1.803e-2326.81Putative acyl-CoA synthetase yngI OS=Bacillus subt... [more]
4CLL5_ORYSJ3.075e-2332.274-coumarate--CoA ligase-like 5 OS=Oryza sativa sub... [more]
4CLL3_ORYSJ5.799e-2230.804-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
LCFA_ECOLI7.574e-2229.00Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL67.574e-2229.00Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECO579.892e-2229.44Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873818 ID=FC873818; Name=FC873818; organism=Citrus clementina; type=EST; length=788bp
CGATCGATGCCCCTCCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAA
GCAGATGAGGATCAAATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGT
GGCGTTGCCTTTCTCTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGC
TGACGCACAAGAGCTTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAG
AACCCGAATCTTTACTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACC
TTTGTTTCACATTTATTCGTTGAACAGCGTGCTTCTGTGCTCGTTGAGAG
CTGGGGCTGGGGTTCTGTTGATGCAGAAGTTTGAGATAGGGGCGCTGCTG
GAGCTGATACAGCGGCACAGGGTGTCGGTGGCGGCTGTGGTGCCGCCCTT
GGTGCTGGCGCTGGCCAAGAACCCGATGGTGGCGGATTATGACCTGAGCT
CGATCAGGGTGGTGCTTTCCGGGGCGGCGCCGCTGGGGAAGGAGCTTGAA
GATGCTCTCCGAAGTAGAGTCCCTCAAGCAATCTTGGGTCAGGGATATGG
AATGACAGAGGCAGGGCCAGTGCTATCAATGTGCCTAGGATTTGCAAAGC
AGCCATTTCCTACAAAGTCAGGATCATGTGGCACCGTTGTTAGAAATGCT
GAGCTCAAAGTTATTGACCCTGAAACTGGTGCCTCCCTTCCCCACAATCA
ACCTGGCGAAATTTGCATCCGCGGCCCTCAAATTATGAAAGGTTACTTGA
ATGATCCTGAAGGCACTGCGGCAACTATAGACGTTGAG
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