FC873818

Overview
NameFC873818
Unique NameFC873818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13595 contig Ccv1_Contig13595:746..1535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: ACSF2_MACFA (Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 67/233 (28.76%), Postives = 111/233 (47.64%), Query Frame = 3
Query:   93 DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP--LFH-IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATID 782
            DP+ + F+SGTTG PKG  L+H +++ +    + GE   L+    + +  +LP  L+H + S+   ++C +     +L    F     LE I R R S               P  + YD+S++R  +   +P   EL  A+ +++    L   YG TE  PV      F +     K+ S G ++ + E ++++ E G     N PGE+CIRG  +M GY  +P+ T   +D
Sbjct:  259 DPINIQFTSGTTGSPKGATLSHYNIVNN--SSILGERLKLHEKTPEQLRMILPSPLYHCLGSVGGTMMCLMYGATLILASPVFNGKKALEAISRERGSFLYGTPTMFVDILNQPDFSSYDISTMRGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENSPVTFA--NFPEDTVEQKAESVGRIMPHTEARIMNMEAGMLAELNTPGELCIRGYCVMLGYWGEPQKTGEAVD 487          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: ACSF2_BOVIN (Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.412e-21
Identity = 71/232 (30.60%), Postives = 109/232 (46.98%), Query Frame = 3
Query:   93 DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP--LFHIYSLNSVLLCSLRAGAGVLLMQK-FEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATI 779
            DP+ + F+SGTTG PKG  L+H +++ +    + G+   L+    +    VLP  L+H        + SL  G  ++L    FE    LE I R R                 P  + YD+S++R  +   +P   EL  A+ +++    L   YG TE  PV  M   F +     K+ S G V+ + E ++++ ETG     N PGE+CIRG  +M GY  +P+ T   I
Sbjct:  256 DPINIQFTSGTTGSPKGATLSHYNIVNNA--NMIGQRLRLHQKTPEESRVVLPSPLYHCLGSVGGTMVSLMHGVTLILCSPVFEGKKTLEAISRERGCFLYGTPTMFVDVLNQPDFSSYDISTMRGGVIAGSPAPPELIRAIINKLNMKELVVAYGTTENSPVTFM--NFTEDTVEQKAESVGRVMPHTEAQIVNTETGTLTELNTPGELCIRGYCVMLGYWGEPQKTEEAI 483          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: ACSF2_RAT (Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.428e-20
Identity = 72/234 (30.77%), Postives = 113/234 (48.29%), Query Frame = 3
Query:   93 DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP--LFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIR--VVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATI 779
            DP+ + F+SGTTG PKG  L+H +++ +    + G+   +     + +  VLP  L+H        + S+  GA +LL    F     LE I R + +               P  + YD ++IR  V+    AP   EL  A+ S++    L   YG TE  PV  M   F +     K+GS G ++ + E ++++ ETG     N PGE+CIRG  +M+GY  +P+ T  T+
Sbjct:  256 DPINIQFTSGTTGNPKGATLSHHNIVNN--SNLIGQRLKMPAKTAEELRMVLPCPLYHCLGSVGGTMVSVVHGATLLLSSPSFNGKKALEAISREKGTLLYGTPTMFVDILNQPDFSSYDFTTIRGGVIAGSLAP--PELIRAIISKMNMKELVVVYGTTENSPVTFM--NFPEDTLEQKAGSVGRIMPHTEAQIVNMETGELTKLNMPGELCIRGYCVMQGYWGEPQKTFETV 483          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: ACSF2_MOUSE (Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.182e-20
Identity = 69/232 (29.74%), Postives = 111/232 (47.84%), Query Frame = 3
Query:   93 DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP--LFHIYSLNSVLLCSLRAGAGVLLMQ-KFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATI 779
            DP+ + F+SGTTG PKG  L+H +++ +    + G+   +     + +  VLP  L+H        + S+  GA +LL    F     LE I R + +               P  + YD +SIR  +   +P   EL  A+ +++    L   YG TE  PV  M   F +     K+GS G ++ + E ++++ ETG     N PGE+ IRG  +M+GY  +P+ T  T+
Sbjct:  256 DPINIQFTSGTTGNPKGATLSHHNIVNN--SMLIGQRLKMPTKTAEELRLVLPSPLYHCLGSVGGTMVSMMHGATLLLSSPSFNGKKALEAISREKGTLLYGTPTMFVDILNQPDFSSYDFTSIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTENSPVTFM--NFPEDTLEQKAGSVGRIMPHTEAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGEPQKTFETV 483          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LCFA_YERPE (Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.428e-20
Identity = 67/237 (28.27%), Postives = 121/237 (51.05%), Query Frame = 3
Query:   81 IKPD----DPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL--NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGT 767
            +KPD    D   L ++ GTTG+ KG +LTH+++ +++ Q      P L     D+V+  LPL+HI++L  N +L   L  G  +L+    +I  +++ + R+  +              N      D S++R+ + G  P+ K + +   +   + +L +GYG+TE  P+++        P+  K  SGS G  V + ++++ D + G  +   +PGE+ +RGPQ+M GY   P+ T
Sbjct:  199 VKPDVINTDTAFLQYTGGTTGVAKGAILTHRNMQSNLEQAKAAYAP-LLQPGRDLVVTALPLYHIFALTVNCLLFIEL-GGRSLLITNPRDIPGMVKELSRYPFTAITGVNTLFNALLNNEEFTHLDFSTLRLSVGGGMPVQKAVAEKWETLTGKHLL-EGYGLTECSPLVT------GNPYDLKHYSGSIGLPVPSTDVRLRD-DDGNDVELGKPGELWVRGPQVMLGYWQRPDAT 425          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: ACSF2_HUMAN (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.428e-20
Identity = 67/246 (27.24%), Postives = 115/246 (46.75%), Query Frame = 3
Query:   54 DEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP--LFH-IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATID 782
            D+ Q  +  +   DP+ + F+SGTTG PKG  L+H +++ +    + GE   L+    + +  +LP  L+H + S+   ++C +     +L    F     LE I R R +               P  + YD+S++   +   +P   EL  A+ +++    L   YG TE  PV      F +     K+ S G ++ + E ++++ E G     N PGE+CIRG  +M GY  +P+ T   +D
Sbjct:  243 DQLQYNQQFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNN--SNILGERLKLHEKTPEQLRMILPNPLYHCLGSVAGTMMCLMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILNQPDFSSYDISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENSPVTFA--HFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVD 484          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: ACSF2_PONAB (Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.258e-20
Identity = 67/246 (27.24%), Postives = 114/246 (46.34%), Query Frame = 3
Query:   54 DEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLP--LFH-IYSLNSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATID 782
            D+ Q  +  +   DP+ + F+SGTTG PKG  L+H +++ +    + GE   L+    + +  +LP  L+H + S+   ++C +     +L    F     LE I R R S               P  + YD+S++   +   +P   EL  A+ +++    L   YG  E  PV      F +     K+ S G ++ + E ++++ E G     N PGE+CIRG  +M GY  +P+ T   +D
Sbjct:  243 DQLQYNQQFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNN--SNMLGERLKLHEKTPEQLRMILPSPLYHCLGSVGGTMMCLMYGATLILASPVFNGKKALEAISRERGSFLYGTPTMFVDILNQPDFSSYDISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTPENSPVTFA--HFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAELNTPGELCIRGYCVMLGYWGEPQKTEEAVD 484          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: 4CLL7_ORYSJ (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.579e-19
Identity = 77/265 (29.06%), Postives = 109/265 (41.13%), Query Frame = 3
Query:    3 IDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSLNSVLLCSLRAGAGVLL---MQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGTAATIDVE 788
            +D+P    L         ++ +P V ++  +  A+ +SSGTTG  K   L H+S I  VA    G +           L   P+FH      VL         V++   + +  I  L+E  +R  V              K        L ++  +  G APL     +  R R P   L  GYG TEAG +  M      Q      GS G V  N E+K++D  TG  LP  Q GE+ +RGP +M GY+ D E  A T + E
Sbjct:  175 LDSPHFRSLLMDCGQAQGQEPLPVVVVRQSETAAIQYSSGTTGRVKAAALPHRSFIAMVA----GFHALRAKAREVRTLLGAPMFHSMGFLFVLQGVALGATTVVVTDAVARAGIRGLVEAAERWAVMDMTASPPVVLGMTKQRC----RLPALERITCGGAPLPAPAIERFRRRFPHVDLCMGYGSTEAGGISRMI----SQEECNHIGSAGRVTENVEVKIVDHVTGKPLPAGQQGELWVRGPAVMTGYVGDNEANATTFNSE 427          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.063e-19
Identity = 66/235 (28.09%), Postives = 115/235 (48.94%), Query Frame = 3
Query:   69 PEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL--NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGT 767
            PEV    +D   L ++ GTTG+ KG +LTH++++ ++ Q      P L+    ++V+  LPL+HI++L  N +L   L  G  +L+    +I  L++ + ++  +              N      D SS+ +   G  P+   + +       Q +L +GYG+TE  P++S+            SGS G  V + E K++D +     P  + GE+C++GPQ+M GY   P+ T
Sbjct:  201 PEVVA--EDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVKATYGPLLH-PGKELVVTALPLYHIFALTMNCLLFIEL-GGQNLLITNPRDIPGLVKELAKYPFTAMTGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQNVVAERWVKLTGQYLL-EGYGLTECAPLVSV----NPHDIDYHSGSIGLPVPSTEAKLVDDDDNEVAP-GEAGELCVKGPQVMLGYWQRPDAT 425          
BLAST of FC873818 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.063e-19
Identity = 66/235 (28.09%), Postives = 115/235 (48.94%), Query Frame = 3
Query:   69 PEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSL--NSVLLCSLRAGAGVLLMQKFEIGALLELIQRHRVSXXXXXXXXXXXXXKNPMVADYDLSSIRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEGT 767
            PEV    +D   L ++ GTTG+ KG +LTH++++ ++ Q      P L+    ++V+  LPL+HI++L  N +L   L  G  +L+    +I  L++ + ++  +              N      D SS+ +   G  P+   + +       Q +L +GYG+TE  P++S+            SGS G  V + E K++D +     P  + GE+C++GPQ+M GY   P+ T
Sbjct:  201 PEVVA--EDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVKATYGPLLH-PGKELVVTALPLYHIFALTMNCLLFIEL-GGQNLLITNPRDIPGLVKELAKYPFTAMTGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQNVVAERWVKLTGQYLL-EGYGLTECAPLVSV----NPHDIDYHSGSIGLPVPSTEAKLVDDDDNEVAP-GEAGELCVKGPQVMLGYWQRPDAT 425          
The following BLAST results are available for this feature:
BLAST of FC873818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
ACSF2_MACFA1.292e-2128.76Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_BOVIN6.412e-2130.60Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_RAT1.428e-2030.77Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_MOUSE3.182e-2029.74Acyl-CoA synthetase family member 2, mitochondrial... [more]
LCFA_YERPE5.428e-2028.27Long-chain-fatty-acid--CoA ligase OS=Yersinia pest... [more]
ACSF2_HUMAN5.428e-2027.24Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_PONAB9.258e-2027.24Acyl-CoA synthetase family member 2, mitochondrial... [more]
4CLL7_ORYSJ1.579e-1929.064-coumarate--CoA ligase-like 7 OS=Oryza sativa sub... [more]
LCFA_SALTY2.063e-1928.09Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI2.063e-1928.09Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873818 ID=FC873818; Name=FC873818; organism=Citrus clementina; type=EST; length=788bp
CGATCGATGCCCCTCCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAA
GCAGATGAGGATCAAATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGT
GGCGTTGCCTTTCTCTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGC
TGACGCACAAGAGCTTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAG
AACCCGAATCTTTACTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACC
TTTGTTTCACATTTATTCGTTGAACAGCGTGCTTCTGTGCTCGTTGAGAG
CTGGGGCTGGGGTTCTGTTGATGCAGAAGTTTGAGATAGGGGCGCTGCTG
GAGCTGATACAGCGGCACAGGGTGTCGGTGGCGGCTGTGGTGCCGCCCTT
GGTGCTGGCGCTGGCCAAGAACCCGATGGTGGCGGATTATGACCTGAGCT
CGATCAGGGTGGTGCTTTCCGGGGCGGCGCCGCTGGGGAAGGAGCTTGAA
GATGCTCTCCGAAGTAGAGTCCCTCAAGCAATCTTGGGTCAGGGATATGG
AATGACAGAGGCAGGGCCAGTGCTATCAATGTGCCTAGGATTTGCAAAGC
AGCCATTTCCTACAAAGTCAGGATCATGTGGCACCGTTGTTAGAAATGCT
GAGCTCAAAGTTATTGACCCTGAAACTGGTGCCTCCCTTCCCCACAATCA
ACCTGGCGAAATTTGCATCCGCGGCCCTCAAATTATGAAAGGTTACTTGA
ATGATCCTGAAGGCACTGCGGCAACTATAGACGTTGAG
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