FC873823

Overview
NameFC873823
Unique NameFC873823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12758 contig Ccv1_Contig12758:243..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873823 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.158e-18
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  429 SMEPSSGSSFGFAGVKAKEGPK--RCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKL 668
            S   ++ +S+  +     E P+  RC TC ++VGLTGF CRCG  FC  HRY+D+HGC FDY+++ RE IAK NPVV A+KL
Sbjct:  152 SAAAAADASYSSSSPATGEQPEANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAKQNPVVVADKL 233          
BLAST of FC873823 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.580e-18
Identity = 46/95 (48.42%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  393 DLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 677
            DLQ    E  + + E  S S       K K+   RC  C K+VGLTGF CRCGN++C VHRYSD H C ++Y+  A E I K NPVV  EK+ KI
Sbjct:  119 DLQASVSETAQQASEEQSKSL-----EKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of FC873823 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 45/153 (29.41%), Postives = 71/153 (46.41%), Query Frame = 3
Query:  216 CVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGSVDLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDK 674
            C   CG +G+    N+CS C+K  +L    A                             L+  P   +     P++  +     VK +    RC  C ++VG+ GF CRCG++FC  HRY ++H CPFDY+ + R A+A   P+++A+KL +
Sbjct:   10 CEGGCGLYGTRVNNNLCSLCYKKSVLQHSPA-----------------------------LRFEPETEQSQCCPPTNSPAVEEEPVKKR----RCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQR 129          
BLAST of FC873823 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.035e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  480 KEGPKRCTTCNKRVGL-TGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 677
            K+    C  C K+ GL + + CRCGN FCA HRY++ HGC +DY++A R  + +ANPVV A KL KI
Sbjct:  661 KKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of FC873823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SAP14_ORYSJ1.158e-1851.22Zinc finger AN1 domain-containing stress-associate... [more]
ZFAN6_BOVIN2.580e-1848.42AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
SAP10_ARATH2.184e-1729.41Zinc finger A20 and AN1 domain-containing stress-a... [more]
ANUB1_HUMAN5.035e-1450.75AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DD04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873823 ID=FC873823; Name=FC873823; organism=Citrus clementina; type=EST; length=852bp
ATTGAAGGCAAGCTTTCACGTCCATAAAACGACGTCGATTAGTTTCAGTC
TTGTCGGTTGATCAAAACCTTGATTTTTGAAACTGATTTTTGGGGAATTT
TTTTTTACAGATTAATTCGGTTCGATTTTGTAAATCAAGATCGGACGAAT
AGGAGGTAGAAAAGATGGAATCACATGATGAAACTGGATGCCAAGCTCCA
GAAGGCCCCATTCTTTGCGTCAACAATTGTGGCTTCTTCGGAAGTGCTGC
TACCATGAATATGTGTTCCAAGTGCCACAAGGCCATGATCCTTAATCAGG
AACAGGCCCAACTAGCAGCTTCATCTATTGGGAGCATTGTGCATGGCAGC
TCCGGTGGGACTGGCAAGGAGCCCATCATTGCTGGCAGCGTGGATCTACA
AGTGGGACCAGTTGAGATAAAGAAATTCTCCATGGAACCATCTAGTGGTT
CTTCCTTTGGCTTCGCAGGAGTGAAAGCAAAGGAAGGCCCTAAAAGGTGT
ACAACTTGCAATAAACGTGTCGGTTTGACAGGGTTCAATTGCAGATGTGG
GAACCTCTTCTGTGCAGTTCACCGATACTCTGACAAGCATGGCTGTCCGT
TTGATTATAGGACTGCTGCTCGGGAAGCAATTGCTAAAGCCAACCCTGTC
GTGAAGGCGGAGAAACTTGACAAAATCTAGAAGTGATGAACTGAAGGTTT
ATGCAAAGAATATGATGCTTTTCTTTTTANGCACGCATGATATAAGTTGG
TTTCTTGTCTGGTTAGATGTCCTTTATTGGTATAAATGGTTTCAGGTCAT
GATTTTCAGGACATCATTGCAGTTATATTCCTTGCTGATTGGCAAGGATT
CC
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