FC873827

Overview
NameFC873827
Unique NameFC873827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_CHLTA (Inorganic pyrophosphatase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ppa PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.410e-18
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  272 AHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC------------------EDNDPLDVLIIMQEPVLPG-CFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYK 694
            AHPWH   +     +   C IEI     VK+ELDK++G++ VDR    S   P  YG +P+T C                   D DPLD+ ++ ++ +  G   L+A+ IG + ++D  E DDKIIAV  DD  Y +  DI E P   L  I+ +F  YK
Sbjct:    9 AHPWHGPVLTRDDYESLCCYIEITPADSVKFELDKETGILKVDRPQKFSNFCPCLYGLLPKTYCGDLSGEYSGQQSNRENIKGDGDPLDICVLTEKNITQGNILLQARPIGGIRILDSEEADDKIIAVLEDDLVYGNIEDISECPGTVLDMIQHYFLTYK 168          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_CHLT2 (Inorganic pyrophosphatase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ppa PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.410e-18
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  272 AHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC------------------EDNDPLDVLIIMQEPVLPG-CFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYK 694
            AHPWH   +     +   C IEI     VK+ELDK++G++ VDR    S   P  YG +P+T C                   D DPLD+ ++ ++ +  G   L+A+ IG + ++D  E DDKIIAV  DD  Y +  DI E P   L  I+ +F  YK
Sbjct:    9 AHPWHGPVLTRDDYESLCCYIEITPADSVKFELDKETGILKVDRPQKFSNFCPCLYGLLPKTYCGDLSGEYSGQQSNRENIKGDGDPLDICVLTEKNITQGNILLQARPIGGIRILDSEEADDKIIAVLEDDLVYGNIEDISECPGTVLDMIQHYFLTYK 168          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_CHLCV (Inorganic pyrophosphatase OS=Chlamydophila caviae GN=ppa PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.410e-18
Identity = 58/159 (36.48%), Postives = 79/159 (49.69%), Query Frame = 2
Query:  275 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------------DNDPLDVLIIMQEPVLPG-CFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYK 694
            HPWH   +     +   C IEI     VK+ELDK +GL+ VDR    S   P  YG +PRT C                   D+DPLD+ ++ ++ +  G   L+A+ IG + +ID GE DDKIIAV  DD  +    DI + P   L  I+ +F  YK
Sbjct:   11 HPWHGPILTQDNYESLCCYIEITPQDSVKFELDKATGLLKVDRPQKFSNFCPCLYGLLPRTYCGELSGKYSGEQSLKENIQGDDDPLDICVLTEKNITHGNILLQARPIGGLRIIDSGEADDKIIAVLEDDLVFSEIQDISDCPCTVLDMIQHYFLTYK 169          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_BOVIN (Inorganic pyrophosphatase OS=Bos taurus GN=PPA1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 64/201 (31.84%), Postives = 100/201 (49.75%), Query Frame = 2
Query:  278 PWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGL------IMVDRVLYSSVVYPH-----NYGFIPRT------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDI---KELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVES 802
            P+HD+ I     ++F+ V+E+ + S  K E+  K  L      +   ++ Y + ++P+     NYG IP+T             C DNDP+DV  I  +    G  +R K +G++ MID+GE D K+IA+  +DP+  +YNDI   K L P  L     +F  YK  + K    N+F     A+N+  +  N   D I+ES
Sbjct:   31 PFHDIPIYADK-EVFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIRVKVLGILAMIDEGETDWKVIAINVEDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGK--PENEF-----AFNAEFKDKNFAID-IIES 222          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR1_ARATH (Soluble inorganic pyrophosphatase 1, chloroplastic OS=Arabidopsis thaliana GN=PPA1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 57/166 (34.34%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  278 PWHDLEIGPGAPKIFNCVIEIGKGSKVKYEL--DKKSGLIMVDRVLYSSVVYPHN----YGFIPRTLCE-------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPH---RLAEIRRFFEDYKKNENK 709
            PWHD+ +  G   +FN ++EI K SK K E+  D+    I  D        YP+N    YG +P+T  +             DNDP+DV+ I +     G  L+ K +  + MID+GE D KI+A+  DDP+    ND++++  H    L  IR +F DYK  + K
Sbjct:   92 PWHDIPLTLG-DGVFNFIVEIPKESKAKMEVATDEDFTPIKQDTKKGKLRYYPYNINWNYGLLPQTWEDPSHANSEVEGCFGDNDPVDVVEIGETQRKIGDILKIKPLAALAMIDEGELDWKIVAISLDDPKAHLVNDVEDVEKHFPGTLTAIRDWFRDYKIPDGK 256          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_MACFA (Inorganic pyrophosphatase OS=Macaca fascicularis GN=PPA1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14
Identity = 55/170 (32.35%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  278 PWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGL------IMVDRVLYSSVVYPH-----NYGFIPRT------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDI---KELPPHRLAEIRRFFEDYKKNENK 709
            P+HD+ I      +F+ V+E+ + S  K E+  K  L      +   ++ Y + ++P+     NYG IP+T             C DNDP+DV  I  +    G  +  K +G++ MID+GE D K+IA+  DDP+  +YNDI   K L P  L     +F  YK  + K
Sbjct:   31 PFHDIPIYADKD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGK 199          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_HUMAN (Inorganic pyrophosphatase OS=Homo sapiens GN=PPA1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14
Identity = 55/170 (32.35%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  278 PWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGL------IMVDRVLYSSVVYPH-----NYGFIPRT------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDI---KELPPHRLAEIRRFFEDYKKNENK 709
            P+HD+ I      +F+ V+E+ + S  K E+  K  L      +   ++ Y + ++P+     NYG IP+T             C DNDP+DV  I  +    G  +  K +G++ MID+GE D K+IA+  DDP+  +YNDI   K L P  L     +F  YK  + K
Sbjct:   31 PFHDIPIYADKD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGK 199          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_PONAB (Inorganic pyrophosphatase OS=Pongo abelii GN=PPA1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 55/170 (32.35%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  278 PWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGL------IMVDRVLYSSVVYPH-----NYGFIPRT------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDI---KELPPHRLAEIRRFFEDYKKNENK 709
            P+HD+ I      +F+ V+E+ + S  K E+  K  L      +   ++ Y + ++P+     NYG IP+T             C DNDP+DV  I  +    G  +  K +G++ MID+GE D K+IA+  DDP+  +YNDI   K L P  L     +F  YK  + K
Sbjct:   31 PFHDIPIYADKD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKRKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINMDDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGK 199          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_MOUSE (Inorganic pyrophosphatase OS=Mus musculus GN=Ppa1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 53/170 (31.18%), Postives = 85/170 (50.00%), Query Frame = 2
Query:  278 PWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGL------IMVDRVLYSSVVYPH-----NYGFIPRT------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPE---YRHYNDIKELPPHRLAEIRRFFEDYKKNENK 709
            P+HD+ I      +F+ V+E+ + S  K E+  K  L      +   ++ Y + ++P+     NYG IP+T             C DNDP+DV  I  +    G  +R K +G++ MID+GE D K+IA+  DDP+   Y+  +D++ L P  L     +F  YK  + K
Sbjct:   31 PFHDVPIYADKD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHSDKHTGCCGDNDPIDVCEIGSKVCARGEIIRVKVLGILAMIDEGETDWKVIAINVDDPDAANYKDISDVERLKPGYLEATVDWFRRYKVPDGK 199          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_KLULA (Inorganic pyrophosphatase OS=Kluyveromyces lactis GN=IPP1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 57/185 (30.81%), Postives = 86/185 (46.49%), Query Frame = 2
Query:  281 WHDLEI-GPGAPKIFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPH---RLAEIRRFFEDYKKNENKEVAVNDFLPASDAYN 754
            +HD+ +    A  IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDPLDVL I ++    G   + K +G+M ++D+GE D K+IA+  +DP     NDI+++  H    L     +F  YK  + K    N F  + +A N
Sbjct:   30 FHDIPLYADEANGIFNMVVEIPRWTNAKLEITKEEPLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNESHPETKAVGDNDPLDVLEIGEQVAYTGQVKQVKVLGVMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKHLPGLLRATNEWFRIYKIPDGK--PENQFAFSGEAKN 212          
The following BLAST results are available for this feature:
BLAST of FC873827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
IPYR_CHLTA3.410e-1835.63Inorganic pyrophosphatase OS=Chlamydia trachomatis... [more]
IPYR_CHLT23.410e-1835.63Inorganic pyrophosphatase OS=Chlamydia trachomatis... [more]
IPYR_CHLCV3.410e-1836.48Inorganic pyrophosphatase OS=Chlamydophila caviae ... [more]
IPYR_BOVIN1.584e-1531.84Inorganic pyrophosphatase OS=Bos taurus GN=PPA1 PE... [more]
IPYR1_ARATH3.528e-1534.34Soluble inorganic pyrophosphatase 1, chloroplastic... [more]
IPYR_MACFA1.751e-1432.35Inorganic pyrophosphatase OS=Macaca fascicularis G... [more]
IPYR_HUMAN1.751e-1432.35Inorganic pyrophosphatase OS=Homo sapiens GN=PPA1 ... [more]
IPYR_PONAB2.987e-1432.35Inorganic pyrophosphatase OS=Pongo abelii GN=PPA1 ... [more]
IPYR_MOUSE2.987e-1431.18Inorganic pyrophosphatase OS=Mus musculus GN=Ppa1 ... [more]
IPYR_KLULA1.639e-1230.81Inorganic pyrophosphatase OS=Kluyveromyces lactis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DD08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873827 ID=FC873827; Name=FC873827; organism=Citrus clementina; type=EST; length=856bp
TCTCTTGCTTTCCTCTACTTAAGCGCCCGTAGAGGAACTTAACTTTAATA
TCTTCGCCATTACGCCTCTCTCTTTTCGAGATCGGTGCGTTTCTTTGTGG
TCTTGAAGCTTCGTTCTCGTTAGGCCCTGTTTGGCTTTCAGTACTTGAAC
CGTTACGGTTATGATGGCTCCACCAATTGAGACTTCAAGCAAAACTCCTG
TCTCCCAACCTCCAGCACATCCTCCGCTTAACGAAAGGATACTTTCTTCA
ATGAGCAGGAGGTCTGTTGCTGCACATCCTTGGCATGATCTTGAGATTGG
ACCTGGAGCTCCAAAGATTTTCAATTGCGTGATTGAAATTGGGAAAGGGA
GCAAGGTGAAATATGAACTTGACAAAAAATCTGGACTGATCATGGTTGAT
CGTGTTCTTTACTCTTCAGTTGTGTACCCCCATAACTATGGTTTCATACC
TCGTACTCTTTGCGAAGACAATGATCCCCTTGATGTCCTGATCATCATGC
AGGAGCCAGTTCTTCCAGGCTGCTTTCTTCGGGCTAAAGCCATTGGACTC
ATGCCTATGATTGATCAGGGTGAGAAAGATGATAAGATCATTGCTGTCTG
TGCTGATGATCCCGAGTACCGACACTACAATGACATTAAGGAGCTTCCAC
CACATCGTTTGGCTGAGATCCGCCGCTTCTTTGAAGACTACAAGAAAAAT
GAGAACAAGGAAGTTGCTGTAAATGACTTTCTGCCAGCCTCTGATGCCTA
TAATTCAGTCCAGCAGTCTATGAACCTCTATGCTGACTATATTGTGGAGA
GCTTGAGGCGGTAGTCGTTTGATCACCTGAGTGATAGATTCCGGCCGTGT
GATGTT
back to top