FC873827

Overview
NameFC873827
Unique NameFC873827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_ASHGO (Inorganic pyrophosphatase OS=Ashbya gossypii GN=IPP1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 57/186 (30.65%), Postives = 84/186 (45.16%), Query Frame = 2
Query:  278 PWHDLEI-GPGAPKIFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPH---RLAEIRRFFEDYKKNENKEVAVNDFLPASDAYN 754
            P+HD+ +      +IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDPLDVL I +     G   + K +G+M ++D+GE D KII +   DP     NDI+++  H    L     +F  YK  + K    N F  + +A N
Sbjct:   29 PFHDIPLYADEENQIFNMVVEIPRWTNAKLEITKEEAMNPIIQDTKKGKLRYVRNCFPHHGYIHNYGAFPQTWEDPNVAHPETKAYGDNDPLDVLEIGETIAYTGQVKQVKVLGVMALLDEGETDWKIIVIDVHDPLAPKLNDIEDVEKHLPGLLRATNEWFRIYKIPDGK--PENQFAFSGEAKN 212          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_ZYGBA (Inorganic pyrophosphatase OS=Zygosaccharomyces bailii GN=IPP1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 56/186 (30.11%), Postives = 87/186 (46.77%), Query Frame = 2
Query:  278 PWHDLEIGPGAPK-IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELP---PHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYN 754
            P+HD+ +     K IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDP+DVL I +     G   + K +G+M ++D+GE D K+IA+  +DP     +DI+++    P +L     +F  YK  + K    N F  + +A N
Sbjct:   29 PFHDIPLYADEDKQIFNMVVEIPRWTNAKLEITKEENLNPIIQDTKKGKLRYVRNCFPHHGYIHNYGAFPQTWEDPNVVHPETKAVGDNDPVDVLEIGETIGYTGQVKQVKVLGIMALLDEGETDWKVIAIDVNDPLAPKLHDIEDVEKYFPGQLRATNEWFRIYKIPDGK--PENQFAFSGEAKN 212          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR2_MOUSE (Inorganic pyrophosphatase 2, mitochondrial OS=Mus musculus GN=Ppa2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 53/191 (27.75%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  317 IFNCVIEIGKGSKVKYELDKKSGL------IMVDRVLYSSVVYPH-----NYGFIPRT------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPE---YRHYNDIKELPPHRLAEIRRFFEDYK----KNENKEVAVNDFLPASDAYNSVQQSMNLYADYIVE 799
            +FN V+EI + +  K E+  +  L      I   ++ Y+  ++PH     NYG +P+T             C DNDP+DV  I  + +  G  +  K +G + +IDQ E D KIIA+  +DPE   +   +D+K+  P  L     +F  YK    K ENK     +F   + A + +  +   + + +++
Sbjct:   86 LFNMVVEIPRWTNAKMEIATEEPLNPIKQDIKNGKLRYTPNIFPHKGYIWNYGALPQTWEDPHLRDKSTDCCGDNDPIDVCEIGSKVLSRGDVVHVKILGTLALIDQSETDWKIIAINVNDPEAEKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENKFAFNGEFKNKAFALDVINSAHERWKEMVMK 276          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_YEAST (Inorganic pyrophosphatase OS=Saccharomyces cerevisiae GN=IPP1 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 54/172 (31.40%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  317 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELP---PHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYN 754
            IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDP+DVL I +     G   + KA+G+M ++D+GE D K+IA+  +DP     NDI+++    P  L     +F  YK  + K    N F  + +A N
Sbjct:   43 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGK--PENQFAFSGEAKN 212          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_CANGA (Inorganic pyrophosphatase OS=Candida glabrata GN=IPP1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 56/186 (30.11%), Postives = 85/186 (45.70%), Query Frame = 2
Query:  278 PWHDLEI-GPGAPKIFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELP---PHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYN 754
            P+HD+ +       IFN V+EI + +  K E+           D K G +   R  +    Y HNYG  P+T  +            DNDP+DVL I +     G   + K +G+M ++D+GE D K+IA+  +DP     NDI+++    P  L     +F  YK  + K    N F  + +A N
Sbjct:   29 PFHDIPLYADKEENIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRYVRNCFPHHGYIHNYGAFPQTWEDPNQTHPETKAVGDNDPVDVLEIGETIGYTGQVKQVKVLGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGK--PENQFAFSGEAKN 212          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_PLAF7 (Probable inorganic pyrophosphatase OS=Plasmodium falciparum (isolate 3D7) GN=PFC0710w PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 53/184 (28.80%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  266 VAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRT--------------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYN---DIKELPPHRLAEIRRFFEDYKKNENKEV 715
            V   PWH +++       +N ++EI K + +K E+           DKK G +   R  ++S+ +  NYG +P+T                       DNDPLD+L I    +  G  +  K +G   +ID+GE D KIIA+  +D  Y   N   DI++  PH L+ +  +F  YK  + K++
Sbjct:  106 VPISPWHHIDL-KNDDGTYNMIVEITKYNYIKLEIQLREKFNVIKQDKKKGKL---RYYHNSIYW--NYGALPQTYEYPKHIYQNKSKKNKEALLFTGDNDPLDILDIGSACLKIGQVVPVKILGAFTLIDEGELDWKIIAINKEDKHYEDINSLSDIEKYYPHTLSLLLEWFRSYKMADTKKL 283          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_CAEEL (Probable inorganic pyrophosphatase 1 OS=Caenorhabditis elegans GN=pyp-1 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 46/166 (27.71%), Postives = 79/166 (47.59%), Query Frame = 2
Query:  278 PWHDLEIGPGAPK-IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELP---PHRLAEIRRFFEDYK 694
            PWHD+ +     K ++N ++EI + +  K E+           D+K G+      ++    Y  NYG +P+T  +            DNDP+DV+ +  +    G  L+ K +G + +ID+GE D K++A+  +D      NDI ++    P  LA    +F +YK
Sbjct:  152 PWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMATKEPFSPIKQDEKKGVARFVHNIFPHKGYIWNYGALPQTWEDPNHVVPDTGAKGDNDPIDVIEVGSKVAGRGAVLQVKVLGTLALIDEGETDWKLVAIDVNDENADKLNDIDDVEKVYPGLLAASVEWFRNYK 317          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR1_CHLRE (Soluble inorganic pyrophosphatase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ppa1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 57/192 (29.69%), Postives = 87/192 (45.31%), Query Frame = 2
Query:  281 WHDLEIGPGAPKIFNCVIEIGKGSKVKYEL--DKKSGLIMVDRVLYSSVVYPHN----YGFIPRT------------LCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRR---FFEDYK--------------KNENKEVAVNDFLPASDAY 751
            WH++ +  G   + + + EI K +  K E+  D+    I  D        YP+N    YG +P+T               DNDP+DV+ I       G   + K +G++ MID GE D K+IA+ ADDP+    ND++++  H   EI++   +F DYK              K  NKE  +N      +AY
Sbjct:   73 WHEIPLYAGDGHL-HYICEIPKETSAKMEVATDEPRTPIKQDVKKGKLRFYPYNINWNYGMLPQTWEDPGHTDATLGAAGDNDPVDVVEIGAAAAKRGGVYKVKPVGVLAMIDDGELDWKVIAISADDPKAALCNDVEDVEKHFPGEIQKVLEWFRDYKIPDGKPANKFGYDNKCMNKEFTLNVIKETHEAY 263          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_DEBHA (Inorganic pyrophosphatase OS=Debaryomyces hansenii GN=IPP1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 52/188 (27.66%), Postives = 86/188 (45.74%), Query Frame = 2
Query:  227 LNERILSSMSRRSVAAHPWHDLEIGPGAPK-IFNCVIEIGKGSKVKYELDK-----------KSGLIMVDRVLYSSVVYPHNYGFIPRTLCE------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPH---RLAEIRRFFEDYKKNENK 709
            L+ R+    + + V+  P+HD+ +     K + N ++E+ + +  K E+ K           K G +   R  +    Y HNYG  P+T  +            DNDPLDV  I ++    G   + K +G+M ++D+GE D KII +  +DP     NDI+++  H    L     +F  YK  + K
Sbjct:   14 LDYRVFIEQNGKPVS--PFHDIPLYANEEKTVLNMIVEVPRWTNAKLEISKEEKLNPILQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNQVHPETKAKGDNDPLDVCEIGEQVGYVGQVKQVKVLGVMALLDEGETDWKIIVIDVNDPLASKLNDIEDVETHLPGLLRATNEWFRIYKIPDGK 199          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_DROME (Inorganic pyrophosphatase OS=Drosophila melanogaster GN=Nurf-38 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 56/187 (29.95%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  278 PWHDLEIGPGAPK-IFNCVIEIGKGSKVKYELDKKSGL------IMVDRVLYSSVVYPH-----NYGFIPRTL-----------CE-DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELP---PHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNS 757
            P HD+ +     K I+N V+E+ + +  K E+  K+ +      I   ++ + +  +PH     NYG +P+T            C+ DNDP+DV+ I       G  L+ K +G + +ID+GE D KIIA+  +DP     NDI ++    P  L     +F+ YK  + K    N F    DA N+
Sbjct:   79 PMHDIPLYANEEKTIYNMVVEVPRWTNAKMEISLKTPMNPIKQDIKKGKLRFVANCFPHKGYIWNYGALPQTWENPDHIEPSTGCKGDNDPIDVIEIGYRVAKRGDVLKVKVLGTIALIDEGETDWKIIAIDVNDPLASKVNDIADVDQYFPGLLRATVEWFKIYKIPDGK--PENQFAFNGDAKNA 263          
The following BLAST results are available for this feature:
BLAST of FC873827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
IPYR_ASHGO3.651e-1230.65Inorganic pyrophosphatase OS=Ashbya gossypii GN=IP... [more]
IPYR_ZYGBA4.769e-1230.11Inorganic pyrophosphatase OS=Zygosaccharomyces bai... [more]
IPYR2_MOUSE4.769e-1227.75Inorganic pyrophosphatase 2, mitochondrial OS=Mus ... [more]
IPYR_YEAST8.134e-1231.40Inorganic pyrophosphatase OS=Saccharomyces cerevis... [more]
IPYR_CANGA8.134e-1230.11Inorganic pyrophosphatase OS=Candida glabrata GN=I... [more]
IPYR_PLAF71.388e-1128.80Probable inorganic pyrophosphatase OS=Plasmodium f... [more]
IPYR_CAEEL1.388e-1127.71Probable inorganic pyrophosphatase 1 OS=Caenorhabd... [more]
IPYR1_CHLRE1.388e-1129.69Soluble inorganic pyrophosphatase 1, chloroplastic... [more]
IPYR_DEBHA3.091e-1127.66Inorganic pyrophosphatase OS=Debaryomyces hansenii... [more]
IPYR_DROME4.037e-1129.95Inorganic pyrophosphatase OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DD08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873827 ID=FC873827; Name=FC873827; organism=Citrus clementina; type=EST; length=856bp
TCTCTTGCTTTCCTCTACTTAAGCGCCCGTAGAGGAACTTAACTTTAATA
TCTTCGCCATTACGCCTCTCTCTTTTCGAGATCGGTGCGTTTCTTTGTGG
TCTTGAAGCTTCGTTCTCGTTAGGCCCTGTTTGGCTTTCAGTACTTGAAC
CGTTACGGTTATGATGGCTCCACCAATTGAGACTTCAAGCAAAACTCCTG
TCTCCCAACCTCCAGCACATCCTCCGCTTAACGAAAGGATACTTTCTTCA
ATGAGCAGGAGGTCTGTTGCTGCACATCCTTGGCATGATCTTGAGATTGG
ACCTGGAGCTCCAAAGATTTTCAATTGCGTGATTGAAATTGGGAAAGGGA
GCAAGGTGAAATATGAACTTGACAAAAAATCTGGACTGATCATGGTTGAT
CGTGTTCTTTACTCTTCAGTTGTGTACCCCCATAACTATGGTTTCATACC
TCGTACTCTTTGCGAAGACAATGATCCCCTTGATGTCCTGATCATCATGC
AGGAGCCAGTTCTTCCAGGCTGCTTTCTTCGGGCTAAAGCCATTGGACTC
ATGCCTATGATTGATCAGGGTGAGAAAGATGATAAGATCATTGCTGTCTG
TGCTGATGATCCCGAGTACCGACACTACAATGACATTAAGGAGCTTCCAC
CACATCGTTTGGCTGAGATCCGCCGCTTCTTTGAAGACTACAAGAAAAAT
GAGAACAAGGAAGTTGCTGTAAATGACTTTCTGCCAGCCTCTGATGCCTA
TAATTCAGTCCAGCAGTCTATGAACCTCTATGCTGACTATATTGTGGAGA
GCTTGAGGCGGTAGTCGTTTGATCACCTGAGTGATAGATTCCGGCCGTGT
GATGTT
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