FC873827

Overview
NameFC873827
Unique NameFC873827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_YERPE (Inorganic pyrophosphatase OS=Yersinia pestis GN=ppa PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.639e-22
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPASDAYNSVQQS 769
            G   P+    VIEI      +KYE+DK++G + VDR + +++ YP NYG+I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+++LP    A+I+ FFE YK  E  K V V+ +  A+ A   +  S
Sbjct:    9 GKDLPEDIYVVIEIPANADPIKYEIDKETGSLFVDRFMSTAMFYPCNYGYINNTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLTKEYDHVKDVQDLPELLKAQIKHFFEHYKDLETGKWVKVDGWEDAAAAKAEILSS 169          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_PASMU (Inorganic pyrophosphatase OS=Pasteurella multocida GN=ppa PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.639e-22
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE 703
            G   P     VIEI   S  +KYE+DK+SG + VDR + +++ YP NYG++  TL  D DP+DVL+    P+ PG  +R + +G++ M D+   D K++AV       EY H  D+ +LP    A+I+ FFE YK  E
Sbjct:    9 GKALPDDIYVVIEIPANSDPIKYEVDKESGALFVDRFMATAMFYPANYGYVNNTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGSDAKVVAVPHSKLTKEYDHIKDVNDLPALLKAQIQHFFESYKALE 146          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_RICFE (Inorganic pyrophosphatase OS=Rickettsia felis GN=ppa PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 54/130 (41.54%), Postives = 78/130 (60.00%), Query Frame = 2
Query:  323 NCVIEIGKG-SKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE 703
            N +IEI      +KYE DK+SG + VDR + +++ YP NYGFIP TL  D DP+DVL++   PV+PG  ++ +A+G++ M D+   D+KIIAV     D  + H  ++ +L       I  FFE YK  E
Sbjct:   16 NVIIEIPMNIGPIKYEFDKESGAVFVDRFMQTTMSYPCNYGFIPHTLSNDGDPVDVLVVAHHPVVPGSVIKCRAVGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLE 145          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_RICBR (Inorganic pyrophosphatase OS=Rickettsia bellii (strain RML369-C) GN=ppa PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 2
Query:  323 NCVIEIGKGS-KVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE 703
            N +IEI   S  +KYE DK+SG + VDR + +++ YP NYGFIP TL  D DP+DVL++   PV+PG  ++ +A+G++ M D+   D+KIIAV     D  + H  ++ ++       I  FFE YK  E
Sbjct:   16 NVIIEIPMNSGPIKYEFDKESGAVFVDRFMQTTMSYPCNYGFIPHTLSNDGDPVDVLVVSHHPVVPGSVIKCRAVGVLMMEDESGFDEKIIAVPTSKLDITFDHIKELDDVCEMLKKRIVHFFEHYKDLE 145          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_ECOLI (Inorganic pyrophosphatase OS=Escherichia coli (strain K12) GN=ppa PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE 703
            G   P+    VIEI      +KYE+DK+SG + VDR + +++ YP NYG+I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+ +LP    A+I  FFE YK  E
Sbjct:    9 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLE 146          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_ECOL6 (Inorganic pyrophosphatase OS=Escherichia coli O6 GN=ppa PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE 703
            G   P+    VIEI      +KYE+DK+SG + VDR + +++ YP NYG+I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K+IAV       EY H  D+ +LP    A+I  FFE YK  E
Sbjct:    9 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLIAVPHTKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLE 146          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_ECO57 (Inorganic pyrophosphatase OS=Escherichia coli O157:H7 GN=ppa PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE 703
            G   P+    VIEI      +KYE+DK+SG + VDR + +++ YP NYG+I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+ +LP    A+I  FFE YK  E
Sbjct:    9 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLE 146          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_SALTY (Inorganic pyrophosphatase OS=Salmonella typhimurium GN=ppa PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.479e-21
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE 703
            G   P+    VIEI      +KYE+DK+SG + VDR + +++ YP NYG+I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+ +LP    A+I  FFE YK  E
Sbjct:    9 GKELPEDIYVVIEIPANADPIKYEVDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGAVIRCRPVGVLKMTDESGEDAKLVAVPHTKLSKEYDHIKDVNDLPELLKAQITHFFEHYKDLE 146          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_SALTI (Inorganic pyrophosphatase OS=Salmonella typhi GN=ppa PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.479e-21
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE 703
            G   P+    VIEI      +KYE+DK+SG + VDR + +++ YP NYG+I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+ +LP    A+I  FFE YK  E
Sbjct:    9 GKELPEDIYVVIEIPANADPIKYEVDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGAVIRCRPVGVLKMTDESGEDAKLVAVPHTKLSKEYDHIKDVNDLPELLKAQITHFFEHYKDLE 146          
BLAST of FC873827 vs. ExPASy Swiss-Prot
Match: IPYR_BUCAI (Inorganic pyrophosphatase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ppa PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.932e-21
Identity = 63/168 (37.50%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  299 GPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD--PEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDF-------LPASDAYNSVQQS 769
            G   P     +IEI   S  +KYE+DKKSG++ VDR + + + YP NYG+I  TL  D DPLDVL+    P+   C +  K IG++ M D+   D KIIAV       EY++ NDI ++      +I  FF++YK  E  K V +  +       L  +DAYN  +++
Sbjct:    9 GDDIPNDIYVIIEISSNSSPIKYEVDKKSGMLFVDRFIPTPMFYPCNYGYINHTLSLDGDPLDVLVPSHYPIKSSCVIHCKPIGILNMQDESGDDAKIIAVPKSKICQEYKNINDISDISELLKKQITHFFQNYKTLEKEKWVEIIGWGNCQDAKLEINDAYNRAKKN 176          
The following BLAST results are available for this feature:
BLAST of FC873827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
IPYR_YERPE6.639e-2237.27Inorganic pyrophosphatase OS=Yersinia pestis GN=pp... [more]
IPYR_PASMU6.639e-2239.86Inorganic pyrophosphatase OS=Pasteurella multocida... [more]
IPYR_RICFE8.671e-2241.54Inorganic pyrophosphatase OS=Rickettsia felis GN=p... [more]
IPYR_RICBR8.671e-2241.54Inorganic pyrophosphatase OS=Rickettsia bellii (st... [more]
IPYR_ECOLI8.671e-2239.86Inorganic pyrophosphatase OS=Escherichia coli (str... [more]
IPYR_ECOL68.671e-2240.58Inorganic pyrophosphatase OS=Escherichia coli O6 G... [more]
IPYR_ECO578.671e-2239.86Inorganic pyrophosphatase OS=Escherichia coli O157... [more]
IPYR_SALTY1.479e-2139.86Inorganic pyrophosphatase OS=Salmonella typhimuriu... [more]
IPYR_SALTI1.479e-2139.86Inorganic pyrophosphatase OS=Salmonella typhi GN=p... [more]
IPYR_BUCAI1.932e-2137.50Inorganic pyrophosphatase OS=Buchnera aphidicola s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DD08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873827 ID=FC873827; Name=FC873827; organism=Citrus clementina; type=EST; length=856bp
TCTCTTGCTTTCCTCTACTTAAGCGCCCGTAGAGGAACTTAACTTTAATA
TCTTCGCCATTACGCCTCTCTCTTTTCGAGATCGGTGCGTTTCTTTGTGG
TCTTGAAGCTTCGTTCTCGTTAGGCCCTGTTTGGCTTTCAGTACTTGAAC
CGTTACGGTTATGATGGCTCCACCAATTGAGACTTCAAGCAAAACTCCTG
TCTCCCAACCTCCAGCACATCCTCCGCTTAACGAAAGGATACTTTCTTCA
ATGAGCAGGAGGTCTGTTGCTGCACATCCTTGGCATGATCTTGAGATTGG
ACCTGGAGCTCCAAAGATTTTCAATTGCGTGATTGAAATTGGGAAAGGGA
GCAAGGTGAAATATGAACTTGACAAAAAATCTGGACTGATCATGGTTGAT
CGTGTTCTTTACTCTTCAGTTGTGTACCCCCATAACTATGGTTTCATACC
TCGTACTCTTTGCGAAGACAATGATCCCCTTGATGTCCTGATCATCATGC
AGGAGCCAGTTCTTCCAGGCTGCTTTCTTCGGGCTAAAGCCATTGGACTC
ATGCCTATGATTGATCAGGGTGAGAAAGATGATAAGATCATTGCTGTCTG
TGCTGATGATCCCGAGTACCGACACTACAATGACATTAAGGAGCTTCCAC
CACATCGTTTGGCTGAGATCCGCCGCTTCTTTGAAGACTACAAGAAAAAT
GAGAACAAGGAAGTTGCTGTAAATGACTTTCTGCCAGCCTCTGATGCCTA
TAATTCAGTCCAGCAGTCTATGAACCTCTATGCTGACTATATTGTGGAGA
GCTTGAGGCGGTAGTCGTTTGATCACCTGAGTGATAGATTCCGGCCGTGT
GATGTT
back to top