FC873832

Overview
NameFC873832
Unique NameFC873832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_BOVIN (60S acidic ribosomal protein P2 OS=Bos taurus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            M+ +A+YLLA LGGN++PSA D++ IL SVG EADD+R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA4_CANAL (60S acidic ribosomal protein P2-B OS=Candida albicans GN=RPP2B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MK +AAYLL V GGN +PSA D+  +L SVG EA++ R++ LL +++GKD+ ELIA G  KL
Sbjct:    1 MKYLAAYLLLVQGGNTSPSASDITALLESVGVEAEESRLQALLKDLEGKDLQELIAEGNTKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_ASPFU (60S acidic ribosomal protein P2 OS=Aspergillus fumigatus GN=AFUA_2G10100 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MK +AAYLL  L GN +PS++D++ +L SVG +AD+ER+  L++E++GKD+ ELIA G  KL
Sbjct:    1 MKHLAAYLLLALAGNTSPSSEDVKAVLSSVGIDADEERLNKLIAELEGKDLQELIAEGSTKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_DROME (60S acidic ribosomal protein P2 OS=Drosophila melanogaster GN=RpLP2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            M+ +AAYLLAVLGG  +P+  DL+ IL SVG E D ER+  ++ E+ GK I +LI  GREKL
Sbjct:    1 MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_RHOGU (60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MK +AAYLL V  GN +PSA+D++ +L +   +AD+ER+  L+ E++GKD+ E+IA G +KL
Sbjct:    1 MKHVAAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_PIG (60S acidic ribosomal protein P2 OS=Sus scrofa GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            M+ +A+YLLA LGGN +PSA D++  L SVG EAD +R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKXLDSVGIEADXDRLNKVISELNGKNIEDVIAQGIGKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_ARTSA (60S acidic ribosomal protein P2 OS=Artemia salina PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            M+ +AAYLLA L GNA+PS  D++ IL SVG E +  +++ +++E+KGKD+  LIA G+ KL
Sbjct:    1 MRYVAAYLLAALSGNADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKL 62          
BLAST of FC873832 vs. ExPASy Swiss-Prot
Match: RLA2_EUPRA (60S acidic ribosomal protein P2 OS=Euplotes raikovi PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 30/62 (48.39%), Postives = 47/62 (75.81%), Query Frame = 3
Query:   57 MKVIAAYLLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 242
            MK IAAY L VLGGN++PSADD++ +L SVG +++ ++++ LL  ++GK + ELI +G  K+
Sbjct:    1 MKYIAAYALLVLGGNSSPSADDVKKVLKSVGVDSEQDKLDALLKNLEGKQLHELIEAGSSKV 62          
The following BLAST results are available for this feature:
BLAST of FC873832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA2_BOVIN2.478e-1254.8460S acidic ribosomal protein P2 OS=Bos taurus GN=R... [more]
RLA4_CANAL4.227e-1254.8460S acidic ribosomal protein P2-B OS=Candida albic... [more]
RLA2_ASPFU4.227e-1253.2360S acidic ribosomal protein P2 OS=Aspergillus fum... [more]
RLA2_DROME1.606e-1154.8460S acidic ribosomal protein P2 OS=Drosophila mela... [more]
RLA2_RHOGU3.578e-1148.3960S acidic ribosomal protein P2 OS=Rhodotorula glu... [more]
RLA2_PIG6.104e-1151.6160S acidic ribosomal protein P2 OS=Sus scrofa GN=R... [more]
RLA2_ARTSA6.104e-1150.0060S acidic ribosomal protein P2 OS=Artemia salina ... [more]
RLA2_EUPRA7.972e-1148.3960S acidic ribosomal protein P2 OS=Euplotes raikov... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AG02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873832 ID=FC873832; Name=FC873832; organism=Citrus clementina; type=EST; length=595bp
CTCTTATTGTTCACATTGTCGATCTTTATCGTCTCACCTCTCTGCTATAA
GCAAAAATGAAGGTGATCGCTGCTTATTTGCTCGCCGTTTTGGGTGGCAA
CGCCAACCCATCGGCCGATGACTTGCAGAACATTCTTGGATCAGTTGGAG
CTGAAGCTGATGATGAGAGAATAGAGTTTCTCTTATCAGAAGTCAAGGGC
AAGGATATTACCGAGCTAATTGCATCCGGAAGGGAGAAGTTGGCATCAGT
GCCATCAGGTGGTGGTGTTGCTGTTGCTGCAGCAGCACCTGCTGCAGGTG
CTGCTGCTGCTCCTGCTGCTGAGGCTAAGAAAGAGGAGAAGGTCGAGGAG
AAGGAAGAATCTGATGATGACATGGGTTTCAGCCTTTTCGACTAAGCTCT
CAATGTTGCTTTTTCTGTATGAAGGATTATTATATTTGGTCATTAGTGTT
TTTATTTGATTGTTACAAGTTTTTGGTTTGTAGTTGGATATGGTTTTCCC
ATTTTAGAGATTGTTTGAACTCTTGGAAGTTTTGTTTAGTTAATGAGGTG
AAATCAACATTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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