FC873838

Overview
NameFC873838
Unique NameFC873838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.614e-75
Identity = 135/223 (60.54%), Postives = 155/223 (69.51%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGA 782
            W  A ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ I C     +WC PGT I VTATNFC          GGWCNPP++HFD+SQP ++ IA YRAG+VPV YRRVPC R GGIRF +NGHSYF LVL+TNVGG+G V  + IKGS TGW  MSRNWG NWQSN  L+GQ+LSF V   DGR VT+ +VAPAGWSFG TY+ +
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATYTSS 247          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.614e-75
Identity = 130/223 (58.30%), Postives = 160/223 (71.75%), Query Frame = 3
Query:  117 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776
            GW  A ATFY              YG+LYS GYGTNTAALST LFN+G SCG CY I C    D ++C+ GT + +TATN C          GGWCNPP+QHFD+++P +  I  Y  G+VPV Y+RVPC ++GG+RFTING  YF LVL++NVGG G + +VSIKGSRTGW  MSRNWG NWQSN YL+GQSLSF+VT+SDG+T+T  +VAPAGW+FG+T+S
Sbjct:   33 GWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFS 255          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.533e-72
Identity = 123/220 (55.91%), Postives = 151/220 (68.64%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779
            W +ARATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG++F   G+ YF +VLI NVGGAGD+  V +KG++TGW  M +NWGQNW + T L GQ LSF VTTSDG T   +NV P  W FG+T+ G
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDG 269          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 6.027e-72
Identity = 129/220 (58.64%), Postives = 152/220 (69.09%), Query Frame = 3
Query:  126 NARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776
            +A ATFY              YGNLY+ GYG   AALS+ALFN+G  CG+CY I C  +  KWC PG  +I +TATN C          GGWCNPP+QHFD+SQP +++IA Y+AG+VPV Y+RVPC R GGIRF I+GH YF LV +TNVGG+G V  +SIKGS TGW  MSRNWG NWQSN YL GQSLSF V   DGR VT++NVAP+ W FG TYS
Sbjct:   30 SAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATYS 249          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.343e-71
Identity = 122/220 (55.45%), Postives = 149/220 (67.73%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779
            W +ARATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY+I CV+DP+WCLPGTI +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV YRR+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF VTTSDG T    NV P  W FG+T+ G
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 272          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.343e-71
Identity = 121/220 (55.00%), Postives = 149/220 (67.73%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779
            W +ARATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY+I CVNDP+WCLPG++ +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV YRR+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF VTTSDG T    NV P  W FG+T+ G
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 265          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.290e-71
Identity = 121/220 (55.00%), Postives = 151/220 (68.64%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779
            W +ARATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG++F   G+ YF +VLI NVGGAGD+  V +K ++TGW  M +NWGQNW ++T L GQ LSF VTT+DG T   +NV P  W FG+T+ G
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDG 275          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.290e-71
Identity = 125/223 (56.05%), Postives = 153/223 (68.61%), Query Frame = 3
Query:  117 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776
            G  N  ATFY              YG+LYS GYGT TAALSTALFN+G SCG CY I C +  D +WCL G ++++TATNFC          GGWCNPP +HFD++QP ++ I  YR G+VPV ++RV C ++GG+RF ING  YF LV I NVGGAG + +VSIKGS+TGW  MSRNWG NWQSN YL+GQ+LSF +TT+DG T    NV P+ WSFG+ YS
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYS 247          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.102e-71
Identity = 120/220 (54.55%), Postives = 157/220 (71.36%), Query Frame = 3
Query:  123 INARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776
            ++  ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG CY+I C  ++ KWC  GT + +TATN C          GGWCNPP+QHFD++QP ++ I  YR G+VPV ++RV C R+GG+RFTING+SYF LVLITNVGG G + +V IKG++TGW  MSRNWG NWQ+N YLN Q++SF VT++ G+T+   +VAP+ W FG+T++
Sbjct:   25 LSGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFT 244          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.939e-70
Identity = 125/221 (56.56%), Postives = 150/221 (67.87%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776
            W  A ATFY              YGNLY+ GYG N AALS+ALFN+G  CG+CY I C  +   WC PGT I +TATN C          GGWCNPP++HFD+SQP +  IA Y+AG+VPV ++RVPC + GGIRFTI+G  YF LV + NVGG+G V  VSIKGS+T W  MSRNWGQNWQSN YLN QSLSF+V   D R VT +N+AP+ W+FG TY+
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGTTYT 243          
The following BLAST results are available for this feature:
BLAST of FC873838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
EXPA8_ORYSJ2.614e-7560.54Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ2.614e-7558.30Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP22_ARATH3.533e-7255.91Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXPA3_ORYSJ6.027e-7258.64Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ARATH1.343e-7155.45Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH1.343e-7155.00Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP26_ARATH2.290e-7155.00Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP11_ARATH2.290e-7156.05Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP12_ORYSJ5.102e-7154.55Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ1.939e-7056.56Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AG09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873838 ID=FC873838; Name=FC873838; organism=Citrus clementina; type=EST; length=783bp
CTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTTCTCCAAGAAAATGTAT
TTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCA
TGCTAATGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTTTCTATGGTG
GTGGCGATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTG
TATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTT
CAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATG
ACCCCAAATGGTGCCTGCCCGGCACCATTATGGTCACAGCTACCAATTTT
TGCCCACCGAACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCC
TCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTC
AATACAGAGCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGA
AGAAGGGGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCT
AGTGTTGATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAA
TCAAAGGATCTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAA
AACTGGCAAAGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGT
CACCACAAGCGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTG
GCTGGTCCTTTGGCCGAACTTACTCCGGTGCTC
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