FC873838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 3.103e-60 Identity = 111/224 (49.55%), Postives = 144/224 (64.29%), Query Frame = 3 Query: 111 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGR-TVTSYNVAPAGWSFGRTY 773 G W A ATFY YGN+Y GYG T ALSTALFN G +CG C+++KCV+ P C G+ +VTATN C GGWCNPP+ HFDL++P F IA ++AG++PV+YRRV C + GGIRF G+ Y+ LV + NVGG GD+ +++KGSRTGW MS NWG ++Q+ + L GQSLSF +T+ R T+ +YN APA WS G+TY Sbjct: 28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.304e-58 Identity = 107/199 (53.77%), Postives = 134/199 (67.34%), Query Frame = 3 Query: 189 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779 YG+L YG TA +S ALF G +CG CYE++CVN WCL G T++VTAT+FC GGWCN P++HF++S+ F +A+ +A +VPV +RRV C R GG+RFTI G + F VLITNV G+V AV +KGSRTGW PM RNWGQNWQ + L GQ LSFEVT GRTV +Y+VAP W F +T+ G Sbjct: 57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEG 255
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 4.953e-58 Identity = 112/225 (49.78%), Postives = 142/225 (63.11%), Query Frame = 3 Query: 117 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776 GWI A AT+Y Y N Y G+G +TAALS LF +G SCG CY+++C DPKWCL G + VTATNFC GWCN P+ HFD+S P F IA+ G+VPV YRRV C RRGG+RFT+ G FN+V+I+NVGG G V +V+++GS+ W M+RNWG NWQS+ L GQ LSF+VT +D +T T NV P+ W FG+T+S Sbjct: 26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFS 245
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57 Identity = 109/222 (49.10%), Postives = 140/222 (63.06%), Query Frame = 3 Query: 120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCV--NDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776 W+ ATFY YGNLY Q YG N AALST LFN+G SCG CY I C P WC G I VT TN+ GGWCN + +FD+SQP +++I Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS TGW M+RNWG NWQ L GQ+LSF VT++ G+T+ + PAGWSFG+T+S Sbjct: 23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57 Identity = 104/199 (52.26%), Postives = 135/199 (67.84%), Query Frame = 3 Query: 189 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779 YG+L + +A LS LFN G SCG+C E++CVN +WCL G+ ++VTAT+FC GGWCN P++H +LS F IA+ RA ++P+ YRRV CGRRGG+RF+++G S+F VLI+NVG G+V V +KG T W PM+RNWGQNW S+ L GQSLSFEVT G+T+ SY+VAP W FG TY G Sbjct: 53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQG 251
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 222.631 bits (566), Expect = 1.882e-57 Identity = 111/221 (50.23%), Postives = 138/221 (62.44%), Query Frame = 3 Query: 120 WINARATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779 W +ARA +Y YG+L GYG TAALSTALFN+G SCG+CYEI C +P+ CL G+I +TAT+ C WC P +HFDLS P+F IAQ +A +VPV YRRVPC + GG++F + G+ +L NVGGAGD+ AVS KGS+T W MSR WGQNW +N L GQS+S VTTSDG T +V PA W FG+T+ G Sbjct: 45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.349e-55 Identity = 109/224 (48.66%), Postives = 139/224 (62.05%), Query Frame = 3 Query: 120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGG--WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTY 773 W A ATFY YGNLY+ GYGT+TAALST LF +G CG+CY+++CV C G+ I VTATN C GG WCNPP+ HFDLS+P F +A +RAG+VPV YRRVPC R GG+RF + G+ Y+ L + NV GAGDV + +K G GW MS NWG ++Q+ L GQ+LSF+VT+ + G+T+ + V PA W FG TY Sbjct: 37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.184e-43 Identity = 95/230 (41.30%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 99 HANGG----GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 773 H N G G W++ ATFY G + GYG TAA+S ALF+NG CG+CYE+K + T++VTATN +HFDL+ P F IA+ + GVVPV+YR+V C R+GGI++TI G+ +N+V++ NVGGAGDV +++KG+ R W P+ R+WGQ W++ L G+SL+F V T D R TS+ VAP W++ TY Sbjct: 71 HVNHGRYKCGPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 6.499e-42 Identity = 87/197 (44.16%), Postives = 118/197 (59.90%), Query Frame = 3 Query: 213 YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYL-NGQSLSFEVTT--SDGRTVTSYNVAPAGWSFGRTYSGA 782 Y T TAALST LF +G CG CYE++CV P WC PG+ +++T TN C GGWCNPP+ HFD++ P F +AQ AG+VPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K S G W + NWG +Q L N L+ ++TT + +T+ + W G Y G+ Sbjct: 85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGS 280
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23 Identity = 72/236 (30.51%), Postives = 107/236 (45.34%), Query Frame = 3 Query: 111 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTINGHS--YFNLVLITNVGGAGDVHAVSIKGSR--TGWQPMSRNWGQNWQSNTYLN---GQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 773 G GW + AT+Y Y + Q + + AA +LF NG CGSCY+IKC + + C + V T+ C GG C HFD+S F +A AGV+ + Y+RVPC + F ++ S Y+ +L+ G GD+ AV I +R GW+ M ++WG W+ N+ S +T+ G+ + + NV P+GW G TY Sbjct: 42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSC---------PGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267 The following BLAST results are available for this feature:
BLAST of FC873838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873838 ID=FC873838; Name=FC873838; organism=Citrus clementina; type=EST; length=783bpback to top |