FC873838

Overview
NameFC873838
Unique NameFC873838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.103e-60
Identity = 111/224 (49.55%), Postives = 144/224 (64.29%), Query Frame = 3
Query:  111 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGR-TVTSYNVAPAGWSFGRTY 773
            G  W  A ATFY              YGN+Y  GYG  T ALSTALFN G +CG C+++KCV+ P  C  G+   +VTATN C          GGWCNPP+ HFDL++P F  IA ++AG++PV+YRRV C + GGIRF   G+ Y+ LV + NVGG GD+  +++KGSRTGW  MS NWG ++Q+ + L GQSLSF +T+   R T+ +YN APA WS G+TY
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.304e-58
Identity = 107/199 (53.77%), Postives = 134/199 (67.34%), Query Frame = 3
Query:  189 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779
            YG+L    YG  TA +S ALF  G +CG CYE++CVN   WCL G  T++VTAT+FC          GGWCN P++HF++S+  F  +A+ +A +VPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRTGW PM RNWGQNWQ +  L GQ LSFEVT   GRTV +Y+VAP  W F +T+ G
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEG 255          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.953e-58
Identity = 112/225 (49.78%), Postives = 142/225 (63.11%), Query Frame = 3
Query:  117 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776
            GWI A AT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C    DPKWCL G  + VTATNFC           GWCN P+ HFD+S P F  IA+    G+VPV YRRV C RRGG+RFT+ G   FN+V+I+NVGG G V +V+++GS+   W  M+RNWG NWQS+  L GQ LSF+VT +D +T T  NV P+ W FG+T+S
Sbjct:   26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFS 245          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57
Identity = 109/222 (49.10%), Postives = 140/222 (63.06%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCV--NDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776
            W+   ATFY              YGNLY Q YG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+           GGWCN  + +FD+SQP +++I  Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PAGWSFG+T+S
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.103e-57
Identity = 104/199 (52.26%), Postives = 135/199 (67.84%), Query Frame = 3
Query:  189 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779
            YG+L    +   +A LS  LFN G SCG+C E++CVN  +WCL G+  ++VTAT+FC          GGWCN P++H +LS   F  IA+ RA ++P+ YRRV CGRRGG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSFEVT   G+T+ SY+VAP  W FG TY G
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQG 251          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.882e-57
Identity = 111/221 (50.23%), Postives = 138/221 (62.44%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 779
            W +ARA +Y               YG+L   GYG  TAALSTALFN+G SCG+CYEI C  +P+ CL G+I +TAT+ C            WC  P +HFDLS P+F  IAQ +A +VPV YRRVPC + GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S  VTTSDG T    +V PA W FG+T+ G
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.349e-55
Identity = 109/224 (48.66%), Postives = 139/224 (62.05%), Query Frame = 3
Query:  120 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGG--WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTY 773
            W  A ATFY              YGNLY+ GYGT+TAALST LF +G  CG+CY+++CV     C  G+  I VTATN C          GG  WCNPP+ HFDLS+P F  +A +RAG+VPV YRRVPC R GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+   L GQ+LSF+VT+ + G+T+ +  V PA W FG TY
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.184e-43
Identity = 95/230 (41.30%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   99 HANGG----GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 773
            H N G    G W++  ATFY               G   + GYG  TAA+S ALF+NG  CG+CYE+K  +        T++VTATN                    +HFDL+ P F  IA+ + GVVPV+YR+V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++   L G+SL+F V T D R  TS+ VAP  W++  TY
Sbjct:   71 HVNHGRYKCGPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.499e-42
Identity = 87/197 (44.16%), Postives = 118/197 (59.90%), Query Frame = 3
Query:  213 YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYL-NGQSLSFEVTT--SDGRTVTSYNVAPAGWSFGRTYSGA 782
            Y T TAALST LF +G  CG CYE++CV  P WC PG+  +++T TN C          GGWCNPP+ HFD++ P F  +AQ  AG+VPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K S  G  W   + NWG  +Q    L N   L+ ++TT  +  +T+   +     W  G  Y G+
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGS 280          
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 72/236 (30.51%), Postives = 107/236 (45.34%), Query Frame = 3
Query:  111 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTINGHS--YFNLVLITNVGGAGDVHAVSIKGSR--TGWQPMSRNWGQNWQSNTYLN---GQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 773
            G GW +  AT+Y              Y +   Q  + +  AA   +LF NG  CGSCY+IKC  + + C    + V  T+ C          GG C     HFD+S   F  +A          AGV+ + Y+RVPC     + F ++  S  Y+  +L+    G GD+ AV I  +R   GW+ M ++WG  W+ N+          S  +T+  G+ + + NV P+GW  G TY
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSC---------PGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267          
The following BLAST results are available for this feature:
BLAST of FC873838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
EXP18_ARATH3.103e-6049.55Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP16_ORYSJ1.304e-5853.77Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH4.953e-5849.78Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP20_ORYSJ1.103e-5749.10Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH1.103e-5752.26Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP21_ARATH1.882e-5750.23Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP30_ORYSJ1.349e-5548.66Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP26_ORYSJ1.184e-4341.30Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ6.499e-4244.16Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ1.362e-2330.51Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AG09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873838 ID=FC873838; Name=FC873838; organism=Citrus clementina; type=EST; length=783bp
CTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTTCTCCAAGAAAATGTAT
TTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCA
TGCTAATGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTTTCTATGGTG
GTGGCGATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTG
TATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTT
CAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATG
ACCCCAAATGGTGCCTGCCCGGCACCATTATGGTCACAGCTACCAATTTT
TGCCCACCGAACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCC
TCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTC
AATACAGAGCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGA
AGAAGGGGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCT
AGTGTTGATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAA
TCAAAGGATCTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAA
AACTGGCAAAGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGT
CACCACAAGCGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTG
GCTGGTCCTTTGGCCGAACTTACTCCGGTGCTC
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