FC873838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15 Identity = 66/241 (27.39%), Postives = 100/241 (41.49%), Query Frame = 3 Query: 105 NGGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTINGHSYFN----LVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNT--YLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776 N G W+ ARAT+Y G N+ Y TA + +F +G CGSCYE++C P+ P T+ +T N+ HFDLS F +A+ G++ V +RRV C G + + N VL+ V GD+ + I+ + W+PM +WG W+ +T L G S +T+ G+ V + +V PA W Y+ Sbjct: 38 NYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPI--------------APYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYT 263
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15 Identity = 67/233 (28.76%), Postives = 103/233 (44.21%), Query Frame = 3 Query: 120 WINARATFYXXXXXXXXXXXXXXYGNLYS-QGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRG-GIRFTINGHS--YFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTYS 776 W+ A AT+Y YG+L + + A+S LF G CG+CY+++C+ D C + + AT+ G HFDLS F H+A G++ + YRR C RG I F +N S Y+ +LI G GD+ ++ I+ GS+ W M WG NW S ++TT S+ +T+++ +V P+ W TY+ Sbjct: 40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCL-DKTICSKRAVTIIATD--------QSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKE-WISMKHIWGANWCIVEGPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYT 262
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.971e-15 Identity = 65/241 (26.97%), Postives = 100/241 (41.49%), Query Frame = 3 Query: 105 NGGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTINGHSYFN----LVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNT--YLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776 N G W+ ARAT+Y G N+ Y TA + +F +G CGSCYE++C P+ P T+ +T N+ HFDLS F +A+ G++ V +RRV C G + + N VL+ V GD+ + I+ + W+PM +WG W+ +T L G S +T+ G+ V + ++ PA W Y+ Sbjct: 38 NYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVFITDMNYEPI--------------APYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDIIPANWRPDAVYT 263
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15 Identity = 68/232 (29.31%), Postives = 96/232 (41.38%), Query Frame = 3 Query: 120 WINARATFYXXXXXXXXXXXXXXYGNLYSQ-GYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRG-GIRFTIN-GHSYFNLVLITNV-GGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGR-TVTSYNVAPAGWSFGRTYS 776 W A AT+Y YG L T A+S LF G CG+CY+++C+ D C + V T+ C GG C + HFDLS F +A G + V YRR C G I F +N G + F L L+ G GD+ ++ +K + + WQ M WG W S +TT R T+++ +V P W+ TY+ Sbjct: 45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCL-DASICSRRAVTVIVTDEC---------PGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPLVGPFSVRLTTLTTRQTLSAQDVIPKNWTPKATYT 266
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15 Identity = 69/237 (29.11%), Postives = 102/237 (43.04%), Query Frame = 3 Query: 117 GWINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCV-NDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYRRVPCGRRG-GIRFTINGHSYFN--LVLITNVGGAGDVHAVSI----KGSRTGWQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 773 GW N AT+Y Y Q + + AA S ++++G CGSCY + C N+ +P T+++T G C HFD+S F +A Q R AG++ + Y RV C G G+ F ++ S N +L+ D+ AV I G+ W PM ++WG W+ S + L G S +T S G+ + N PAGW+ G Y Sbjct: 38 GWSNGIATWYGDPNGAGSEGGACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQG--PGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGSALQG-PFSVRLTFSSGQMFVASNAIPAGWNPGMAY 271
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15 Identity = 66/233 (28.33%), Postives = 102/233 (43.78%), Query Frame = 3 Query: 120 WINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYRRVPCGRRG-GIRFTINGHSYFN--LVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYLNGQS-LSFEVTT-SDGRTVTSYNVAPAGWSFGRTY 773 W A +T+Y YGN +Q + +A +LF +G CG+CY++KC + C + V T+ C C HFDLS F +A Q R G + + Y++V C G + F ++ S N VL+ V G G++ + +K + W MS++WG W+ + ++ LS VT+ G+TV + NV PA W G Y Sbjct: 47 WSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA-CSKNPVTVVITDECPG-----------CVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIY 267
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14 Identity = 64/236 (27.12%), Postives = 96/236 (40.68%), Query Frame = 3 Query: 108 GGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPC---GRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG---WQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWS 758 G W NA+AT+Y G + + T+ + L+ G CGSCY ++C +P C T+ +T N+ Q HFDLS F +A+ RAG++ V + RVPC G + G + VL+ G GDV V +K + G W PM +WG W+ SN L S + + G+T+ + +V P W+ Sbjct: 44 GAAAWGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPL--------------SQYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRA-PFSIRIRSDSGKTLVAPDVIPLNWT 263
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14 Identity = 64/240 (26.67%), Postives = 109/240 (45.42%), Query Frame = 3 Query: 102 ANGGGGWINARATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTING--HSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776 A G W++A+AT+Y Y ++ + + A + +F +GL CGSC+EIKC + P C ++V T+ + HFDL+ F +A+ +AG++ + +RRV C + F + + + +L+ V G GD+ AV I KGS T ++P+ +WG W+ S+ + G ++ ++TT G +V PAGW Y+ Sbjct: 43 AKYGSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDM------------NYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIKEKGSDT-YEPLKHSWGAIWRKDSDKPIKG-PITVQLTTEGGTKTVYDDVIPAGWKPNTAYT 267
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.734e-14 Identity = 62/234 (26.50%), Postives = 98/234 (41.88%), Query Frame = 3 Query: 105 NGGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC--LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA-------QYRAGVVPVAYRRVPCGRRGGIRFTIN----GHSYFNLVLITNVGGAGDVHAVSI-KGSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGW 755 N W+ ARAT+Y G N+ Y + + +F +G CGSCYE+KC P C P T+ +T N+ HFD S F +A +AG++ + +RRV C GG + T + + + VL+ V GDV + + + W+PM +WG W+ +T ++ S VTT G+++ + +V P W Sbjct: 38 NYNAPWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPI--------------SAYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIWRMDTATPLKAPFSIRVTTESGKSLIAKDVIPVNW 256
BLAST of FC873838 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 5.734e-14 Identity = 67/241 (27.80%), Postives = 108/241 (44.81%), Query Frame = 3 Query: 102 ANGGGGWINARATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRGGIRFTIN---GHSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPMSRNWGQNWQ--SNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 776 A G W++A+AT+Y Y ++ + + A + +F +GL CGSC+EIKC + P C ++V T+ + HFDL+ F +A+ +AG++ + +RRV C + F + G +Y L L+ V G GD+ AV + KGS T ++P+ +WG W+ S+ L G L+ +TT G +V PA W Y+ Sbjct: 44 ATYGKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECSGKPVVVHITDM------------NYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDT-YEPLKHSWGAIWRKDSDKPLKG-PLTVRLTTEGGTKSVYDDVIPANWKANTAYT 268 The following BLAST results are available for this feature:
BLAST of FC873838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873838 ID=FC873838; Name=FC873838; organism=Citrus clementina; type=EST; length=783bpback to top |