FC873846
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34 Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 2 Query: 14 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 670 L+LAPTRELA QV ++ E + + + V+GG PI Q++AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P RQ M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK + H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ + N Sbjct: 73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34 Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 2 Query: 14 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 670 L+LAPTRELA QV ++ E + + + V+GG PI Q++AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P RQ M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK + H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ + N Sbjct: 73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34 Identity = 91/229 (39.74%), Postives = 132/229 (57.64%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 664 P LVLAPTREL Q+ +E + A + VYGG I QMRALD G D + TPGR++DLI+R ++L+ V+++VLDEAD+ML +GF + I+ E +P RQ +MFSAT P I++L +LK LTV VG + + + + +K S++ L+ GG +VF +TKR AD L + ++ +N +HGD +Q +RE L AF+ GR Sbjct: 248 PTALVLAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVEY----VDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGR 472
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.237e-34 Identity = 86/225 (38.22%), Postives = 138/225 (61.33%), Query Frame = 2 Query: 14 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 670 L+LAPTRELA QV ++ E + ++ + V+GG PI Q++AL G VVGTPGRVID + R L + + ++LDEAD+M+++GF +D+ I++++P + RQ M+FSATMP I++L +++K+P V + + SD ++ + Y+I + EK + H + IVF +TKR D L A ++K Y E LHGDI+Q++R L F++ + + Sbjct: 73 LILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDE---YYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.816e-34 Identity = 90/226 (39.82%), Postives = 132/226 (58.41%), Query Frame = 2 Query: 2 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKL-ADGIPLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 661 NP CLVL+PTRELA Q+ E+ L +ICVYGG+ Q+ A+ GVD V+GTPGR+ DLI+ N L LS+V FVVLDEAD+ML +GF E V IL + RQ +MFSAT P + L +++ NP+ V ++G D D + + + +I L H ++ + +VF K +A+RL + + + +HG+ +QS+R R+LS F++G Sbjct: 191 NPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKV-IIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEG 415
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.984e-34 Identity = 83/225 (36.89%), Postives = 131/225 (58.22%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 664 P+ LVLAPTRELA Q+++E + S+ + CVYGG P Q+R L GV+ + TPGR+ID+++ NL V ++VLDEAD+ML +GF + I++++ +RQ +M+SAT P +++LT YL +P+ V VG + + I L + T ++ +I L T A KC++F TKR D + + + A + +HGD Q +R+ L F+ G+ Sbjct: 179 PIVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALTRDYLNDPIQV-TVGSLELAASHTITQLVEVVTEFEKRDRLIKHLETATADPEAKCLIFASTKRTCDEITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGK 402
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DBP1_YEAST (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae GN=DBP1 PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 8.501e-34 Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFR 655 P LVLAPTRELA Q+ +E + + VYGG PI +QMR +D G D +V TPGR+ DL++R ++L+ ++++VLDEAD+ML +GF + I+E +NRQ +MFSAT P I+ L +L N L+V VG + + + I LY M +K +++ L EH G ++F +TKR AD+L + +++ +HGD +Q++RER LSAF+ Sbjct: 238 PSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRI-LY--VDDMDKKSALLDLLSAEHK--GLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFK 458
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DBP1_YEAS7 (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP1 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 8.501e-34 Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFR 655 P LVLAPTRELA Q+ +E + + VYGG PI +QMR +D G D +V TPGR+ DL++R ++L+ ++++VLDEAD+ML +GF + I+E +NRQ +MFSAT P I+ L +L N L+V VG + + + I LY M +K +++ L EH G ++F +TKR AD+L + +++ +HGD +Q++RER LSAF+ Sbjct: 238 PSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRI-LY--VDDMDKKSALLDLLSAEHK--GLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFK 458
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.110e-33 Identity = 85/225 (37.78%), Postives = 133/225 (59.11%), Query Frame = 2 Query: 14 LVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 670 L+LAPTRELA QV ++ E + + V+GG PI Q++AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P + RQ M+FSATMP I+ L +++K P + + + SD ++ + Y+I + EK + H + IVF +TKR D L A ++K Y E LHGDI+Q++R L F++ + + Sbjct: 73 LILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDE---YYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DBP3_COCIM (ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis GN=DBP3 PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.110e-33 Identity = 85/228 (37.28%), Postives = 131/228 (57.46%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGK----CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 661 P L++ PTRELA Q+ + SA + C+YGG+P HQ R + V+ TPGR+ D +NLS V+++VLDEAD+ML GF +D++ I++ +P Q RQ +MF+AT P +R+L + KNP+TV + SD + I YEK S + +L+ + GGK +VF K++A R+ + +K + +HGD+SQ++R R+L AF+ G Sbjct: 173 PCALIITPTRELAVQIYDQLLRFSSAVDVGIACIYGGSPKDHQRREIR-NASVVIATPGRLKDFQADQTINLSGVKYLVLDEADRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSG 399 The following BLAST results are available for this feature:
BLAST of FC873846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873846 ID=FC873846; Name=FC873846; organism=Citrus clementina; type=EST; length=670bpback to top |