FC873846
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.110e-33 Identity = 81/225 (36.00%), Postives = 132/225 (58.67%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 664 P+ LVLAPTRELA Q++KE + S + CVYGG P S Q+R L GV+ ++ TPGR+ID+++ NL V ++VLDEAD+ML +GF + I++++ +RQ +M+SAT P ++ L + YL +P+ V +G + + I + + T ++ + L T + K I+F TKR D + ++ + + +HGD +Q++R+ L+ FR GR Sbjct: 187 PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQ-IGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 1.450e-33 Identity = 77/223 (34.53%), Postives = 131/223 (58.74%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 664 P+ L+LAPTRELA Q+++E + + + C+YGG P Q+R L GV+ V+ TPGR+ID+++ NL V ++VLDEAD+ML +GF + I+ ++ +RQ +++SAT P + +L ++L++P ++G +D K I EK + + L+ + G K ++F +TKR D++ + + +HGD +QS+R+R L+ F+ GR Sbjct: 239 PIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKA-IIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 460
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DBP2_VANPO (ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP2 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.450e-33 Identity = 81/225 (36.00%), Postives = 129/225 (57.33%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 664 P+ LVLAPTRELA Q++KE + S+ + CVYGG P Q+R L G + V+ TPGR+ID+++ NL V ++VLDEAD+ML +GF + I++++ +RQ +M+SAT P ++ L + YL +P+ V +G + + I L + + ++ ++ L T K K +VF TKR D + + + + +HGD Q +R+ L FR+GR Sbjct: 187 PIVLVLAPTRELAVQIQKECSKFGSSSRIRNSCVYGGVPRGQQIRELSRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAHDYLNDPIQVQ-IGSLELSASHNITQLVEVVSDFEKRDRLLKHLETASEDKDSKILVFASTKRTCDEVTKYLREDGWPALAIHGDKDQRERDWVLQEFREGR 410
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.894e-33 Identity = 81/225 (36.00%), Postives = 133/225 (59.11%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 664 P+ LVLAPTRELA Q+++E + S + CVYGG P Q+R L GV+ V+ TPGR++D+++ NL V ++VLDEAD+ML +GF + I++++ +RQ +M+SAT P ++ L + YLK+ + V+ +G + + I + + T ++ ++ L T K KC++FT TKR AD + + + + +HGD Q +R+ L+ FR G+ Sbjct: 190 PIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDYLKDQIQVN-IGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVMENKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGK 413
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.894e-33 Identity = 88/224 (39.29%), Postives = 127/224 (56.70%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR 664 P+ LVLAPTREL Q++K E +L + VYGG Q+RAL G + V+ TPGR+IDL + LS V F+VLDEAD+ML +GF + I+ + NRQ +M+SAT P +R L Y+ + V +VG+ + K I + + + ++ +IG + ++ KG K IVF KR D L + + +S Y LHGD SQ+ R++ L FR GR Sbjct: 161 PIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQTLMWSATWPREVRGLAESYMNEYIQV-VVGNEELKTNSKIKQIVEVCSGREKEDKLIG--VLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGR 381
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 2.473e-33 Identity = 87/236 (36.86%), Postives = 138/236 (58.47%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LPQN--RQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKG--------GKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 661 P LVLAPTRELA Q+ +E + + L + YGGTP+ +Q+R L+ G D +V TPGR++D+++R+ ++L ++++V+DEAD+ML +GF + I+ER +P+ RQ M+FSAT PP I+ L + +L N +TV VG S + + L S EK + L+ + G +VF +TKR+AD L + + +K + +HGD +Q +RE L +F+ G Sbjct: 169 PRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDG----EKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTG 400
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: Y1679_STAES (Probable DEAD-box ATP-dependent RNA helicase SE_1679 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1679 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.230e-33 Identity = 84/225 (37.33%), Postives = 132/225 (58.67%), Query Frame = 2 Query: 14 LVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 670 L+LAPTRELA QV ++ E + + V+GG PI Q++ L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P + RQ M+FSATMP I+ L +++K P + + + SD ++ + Y+I + EK + H + IVF +TKR D L A ++K Y E LHGDI+Q++R L F++ + + Sbjct: 73 LILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDE---YYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DED1_CANAL (ATP-dependent RNA helicase DED1 OS=Candida albicans GN=DED1 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33 Identity = 91/228 (39.91%), Postives = 136/228 (59.65%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV-YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDG 661 P LV+APTREL Q+ +E + S S CV YGG I QMR +D G D +V TPGR+ DL+ R ++L+ ++++VLDEAD+ML +GF + I+E ++RQ +MFSAT P I+ L +LK+ L+V VG + + + I + EK S+I L++ + + G IVFT+TKR AD LA + + + +HGD SQ +RE+ L+AF++G Sbjct: 270 PTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKI----LYVEDDEKKSVILDLLSAN-ENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNG 492
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33 Identity = 83/226 (36.73%), Postives = 128/226 (56.64%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 670 P LVLAPTRELA QV + F + + + + +YGG Q+RAL G VVGTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P+ Q +FSATMP IR ++ +++KNP + + + + +Y + + E I+F +TK ++ A+ ++ YN L+GD++Q+ RE+TL + GR + Sbjct: 75 PQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQTALFSATMPEAIRRISKRFMKNPQEIKI----QSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLD 296
BLAST of FC873846 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.228e-32 Identity = 77/223 (34.53%), Postives = 130/223 (58.30%), Query Frame = 2 Query: 5 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 664 P+ LVLAPTRELA Q+++E + S + + C+YGG P Q+R L GV+ V+ TPGR+ID+I+ + NL V ++VLDEAD+ML +GF ++ I+ ++ +RQ + +SAT P + L +L +P V ++G + K I + S +K + + L+ + G + ++F TK+ D++ + + +HGD SQ++R+ LS F+ G+ Sbjct: 165 PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKV-IIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGK 386 The following BLAST results are available for this feature:
BLAST of FC873846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873846 ID=FC873846; Name=FC873846; organism=Citrus clementina; type=EST; length=670bpback to top |