FC873857

Overview
NameFC873857
Unique NameFC873857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873857 vs. ExPASy Swiss-Prot
Match: ERH_ECHMU (Enhancer of rudimentary homolog OS=Echinococcus multilocularis GN=ERH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 37/98 (37.76%), Postives = 63/98 (64.29%), Query Frame = 3 
Query:   84 HTIILMQTSPSRA-TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 374
            HTI+L+Q    +  +R + DY +++Q ++G+C +YE +LK+ NP    ITYD++ L+ FID LAD+S L +  +   Y+P+ + WIK+  +  L+  A
Sbjct:    3 HTILLVQQQVKKPESRVWADYETLNQCLEGVCKIYEEQLKQQNPTAPTITYDISQLFKFIDQLADLSCLEFHPATGTYVPHTKDWIKENIYALLRNQA 100
[Close]
BLAST of FC873857 vs. ExPASy Swiss-Prot
Match: ERH_CAEEL (Enhancer of rudimentary homolog OS=Caenorhabditis elegans GN=T21C9.4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 35/91 (38.46%), Postives = 65/91 (71.43%), Query Frame = 3 
Query:   84 HTIILMQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQ 356
            HTI+L+Q + +  +R++ DY + ++ ++GIC +YE  LK+  PA  +ITYD++ L+ FID L D+S LV D++   Y+P+++Q++K+  ++
Sbjct:    3 HTILLLQPTDNIESRSWSDYENTTECLEGICRVYEEYLKKKVPAQNEITYDISHLFEFIDDLKDLSMLVLDNTTYTYVPHNKQYVKESIYK 93
The following BLAST results are available for this feature:
BLAST of FC873857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ERH_ECHMU7.425e-1637.76Enhancer of rudimentary homolog OS=Echinococcus mu... [more]
ERH_CAEEL7.425e-1638.46Enhancer of rudimentary homolog OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873857 ID=FC873857; Name=FC873857; organism=Citrus clementina; type=EST; length=746bp
CAAAAAAAAAAAAAATTAAATAAAAAAAATCGCGCTCGCCCTTGCTCTTG
ACGCTATCATCGCTATCTTCAATGGCTAATAGGCACACCATTATTCTGAT
GCAGACTTCTCCAAGCAGAGCAACAAGAACCTTCATGGATTATGGTTCAA
TAAGCCAAGCTATGGATGGTATATGTGGACTTTATGAAAGGAAGCTTAAG
GAGTTAAATCCAGCAATCAGAGACATCACTTATGATGTTGCAGATCTCTA
CAACTTCATTGATGGTCTTGCAGACATGAGTGCATTAGTATACGATCACT
CAATTCAGGCTTATTTGCCGTATGACAGACAGTGGATCAAACAAAGGACA
TTTCAACATCTTAAGAAGTTGGCGCATTGAATAAATACTTATTATATTCA
GCCACGCCAGTGTTTTGTTGTTTCCTAATTTCTCTCTGGCCCTGAACATG
GTAGTCGGAAGATGTAAACAAATTGTAGAATCAGAGTCTTATTTTGGTTT
TGCCCTTGGGCAGAAGATTGCGGAATGTGGCAATCATATTCTCTTCCTGT
GCTTCCTGTGTCACAGGAAGGGAGATTTATTGAAGAACAGTTTTATCGAT
AGTTATTGGTCCAATGTAAGCTGACGCGTCATAGCCAGAGAGCGCGCAAA
TCTAAAAAGTTTCTGACATTTGATATGGAACTATATATATGATGTGTAAC
TTGATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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