FC873870

Overview
NameFC873870
Unique NameFC873870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  466 SQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 702
            +QP   PK     VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP  NK   KA +LDEII+Y++ LQ QV+ LSM
Sbjct:  122 AQPQTKPK-----VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKT-DKASMLDEIIDYVKFLQLQVKVLSM 194          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: UNE12_ARATH (Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.273e-15
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  337 GNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 702
            G+G+G R +D D    + S  +   H    +  P S          P  P      VRARRGQATD HS+AER RRE+I+ER++ LQ+LVP  NK   +A ++DEI++Y++ L+ QV+ LSM
Sbjct:  100 GHGSGKRFSD-DVVDNRCSSMKPVFHGQPMQQPPPSA---------PHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 210          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 65/210 (30.95%), Postives = 102/210 (48.57%), Query Frame = 1
Query:  175 KGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDS---DGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRA-------------RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFSP 756
            +G   G  LS+    RE +   P       A  +G+ +R D  D SA      +G G  NR   +       I+ +G+   +  SK+E EP      ++  +  E    D    R+             +R +A + H+L+ER RR++I+ERMK LQ+L+P CNK   KA +LDE I Y++SLQ Q++ +SM    +   M PG++ + P
Sbjct:  159 RGGESGPLLSK-AVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAV-----AGGGAYNRKGKAVAMTAPAIEITGT-SSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNK-SDKASMLDEAIEYMKSLQLQIQMMSMGC-GMMPMMYPGMQQYMP 359          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: PIF3_ARATH (Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-13
Identity = 49/138 (35.51%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  289 RRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 702
            R+D E E A  V +S G+GN       DG     S S    H +  + +  S    E++    +        + ++R ++ + H+L+ER RR++I+E+M+ LQ+L+P CNKV  KA +LDE I Y++SLQ QV+ +SM
Sbjct:  271 RKDQESEKAV-VCSSVGSGNS-----LDGPSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKV-DKASMLDEAIEYLKSLQLQVQIMSM 401          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: BH119_ARATH (Transcription factor bHLH119 OS=Arabidopsis thaliana GN=BHLH119 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 41/129 (31.78%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  316 KHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 702
            K V+T +   + + VN ++ +R++    R        E + +  K  E+     +  ++ +     +R +A D H+L+ER RRE+I+ERMK LQ+L+P C K   K  +L+++I Y++SLQ Q++ +SM
Sbjct:  296 KEVATETAGTSYSGVNKAETERVQIQPER--------ETKITEDKKREETIAEIQGTEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKT-DKVSMLEDVIEYVKSLQLQIQMMSM 415          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: SPT_ARATH (Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  334 SGNGNGNRVN-DSDGKRIKTS-----GSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMK 705
            SG GN N V  +S G R+ +S     G+  D +  ++E    +V     +S+     +       ++R +A + H+L+E+ RR +I+E+MK LQ L+P  NK   KA +LDE I Y++ LQ QV+ L+M+
Sbjct:  133 SGGGNNNNVQGNSSGTRVSSSSVGASGNETDEYDCESEEGGEAVVDEAPSSKSGPSSRSS-----SKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKT-DKASMLDEAIEYLKQLQLQVQMLTMR 256          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: PIF4_ARATH (Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 48/157 (30.57%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  247 NLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVND-----SDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 702
            +L+  M+H     + +++E++   + S+SSG  +G          + G+ I T   R   +H+      S     + N +              RR +A + H+L+ER RR++I+ERMK LQ+L+P C+K   KA +LDE I+Y++SLQ Q++ + M
Sbjct:  174 DLDVSMSHD----RSKNIEEKLNPNASSSSGGSSGCSFGKDIKEMASGRCITTDRKRKRINHTDESVSLSDAIGNKSNQRSGSN----------RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQVMWM 315          
BLAST of FC873870 vs. ExPASy Swiss-Prot
Match: PIF5_ARATH (Transcription factor PIF5 OS=Arabidopsis thaliana GN=PIF5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 47/155 (30.32%), Postives = 81/155 (52.26%), Query Frame = 1
Query:  316 KHVSTSSGNGNGNRVNDSDGKRIK-TSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPP----KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM-------KLEAVNTRMNPGIE 744
            + + TSSG  +G     ++ + +  TS + D       +A+  SV  ++      +      K        RR +A + H+L+ER RR++I+ERMK LQ+L+P C++   KA +LDE I+Y++SLQ Q++ + M          A +  M PG++
Sbjct:  182 ERLDTSSGGSSGCSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPGVQ 335          
The following BLAST results are available for this feature:
BLAST of FC873870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
BH069_ARATH2.056e-1662.03Transcription factor bHLH69 OS=Arabidopsis thalian... [more]
UNE12_ARATH2.273e-1541.80Transcription factor UNE12 OS=Arabidopsis thaliana... [more]
PIF1_ARATH3.282e-1430.95Transcription factor PIF1 OS=Arabidopsis thaliana ... [more]
PIF3_ARATH1.247e-1335.51Transcription factor PIF3 OS=Arabidopsis thaliana ... [more]
BH119_ARATH1.801e-1231.78Transcription factor bHLH119 OS=Arabidopsis thalia... [more]
SPT_ARATH4.012e-1234.62Transcription factor SPATULA OS=Arabidopsis thalia... [more]
PIF4_ARATH5.240e-1230.57Transcription factor PIF4 OS=Arabidopsis thaliana ... [more]
PIF5_ARATH3.397e-1130.32Transcription factor PIF5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873870 ID=FC873870; Name=FC873870; organism=Citrus clementina; type=EST; length=766bp
TTCTTGAATCTTCTCAAATAAATGCCAGGACCTGGTTTGATGAGCGCTTG
AGTTCGAGTGTTGTCTGTGAGATTATTGTAGATGGATCAGGGTTCCTATA
ATTTTGCAGAGATCTGGCAGTTTCCGGTTCCCGGGAGTGGCAGTATGAGT
GAATCTGGCGGTGGGTTGGGGCAGAAAGGAGCTCACTTTGGGCAGCATTT
GAGTCAATTTGGGACTAATCGAGAGGTTTCTGGTGATGATCCAGTGAACT
TGGAGCATAAAATGGCCCATGGGAATGGAGTAAGGAAGCGGCGTGATGTG
GAGGATGAGTCAGCCAAGCATGTATCTACAAGCAGTGGCAACGGCAACGG
CAATCGAGTGAATGATTCTGATGGAAAACGGATTAAAACATCTGGAAGTA
GAGATGACAATCACCATTCCAAAGCTGAAGCAGAGCCCAGTTCGGTCAAG
CCTGCTGAACAAAATAGTCAACCACCGGAGCCTCCTAAACAGGATTACAT
CCATGTACGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTTTAGCAG
AAAGAGCTAGGAGAGAAAAGATAAGCGAAAGGATGAAAATTCTCCAGGAC
TTGGTTCCTGGTTGTAACAAGGTCATCGGCAAAGCATTGGTCCTGGATGA
GATAATTAACTACATCCAATCGCTACAGCGGCAGGTTGAGTTTCTGTCAA
TGAAGCTTGAAGCAGTCAATACAAGAATGAACCCTGGCATTGAGGTATTT
TCTCCTAAGGATTTTA
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