FC875276

Overview
NameFC875276
Unique NameFC875276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875276_ssr27 microsatellite FC875276_ssr27:27..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig676 contig Ccv1_Contig676:20..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_CHICK (60S ribosomal protein L15 (Fragment) OS=Gallus gallus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.414e-47
Identity = 95/155 (61.29%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  175 RPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H  IR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R
Sbjct:    2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRR 155          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.877e-40
Identity = 84/144 (58.33%), Postives = 94/144 (65.28%), Query Frame = 1
Query:  208 GYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            GYKAKQ                       YGKP + GV QLKF RS +SV EERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R
Sbjct:    1 GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVXEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRR 143          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 86/194 (44.33%), Postives = 114/194 (58.76%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 636
            MG Y ++ E W++ +   +R L   R  ++R+ P++VR+ RPTR D+AR LGYK KQ                         KP   GV ++   +S + +AEERA RK   + VLNSYW+ ED  +K++EVILVDP H AI+ DP++NWLC   H+ R  RGLTSAGKK RGLR KG    K RPS RA  +R
Sbjct:    1 MGIYKYIREAWKRPKESYVRQLLWERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKPRPKNSK--KPATLGVNKITMGKSIQRIAEERAARKYPNMEVLNSYWVGEDGKHKWYEVILVDPYHPAIKADPQLNWLCTGKHRGRAFRGLTSAGKKGRGLRNKGIGAEKVRPSIRAHGRR 192          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 83/194 (42.78%), Postives = 110/194 (56.70%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 636
            M  Y +V E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA +K   + VLNSYW+ +D   K++EVILVDP   +I+ND   NWLC   HK R  RGLTSAGKK RGL  KG    KARPS RA  K+
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVILVDPCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGLMYKGKGAEKARPSVRANGKK 192          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.746e-37
Identity = 93/199 (46.73%), Postives = 111/199 (55.78%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR-NILF 648
            MGAY +V+E+ R+KQSDV+RFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ                       +GKP NQG+ QLKFQRS RS AEER  R+ GGLR+LNSYWI +  +    +  L  P+       P       P      L      GK+ RGL G+G  H K+     A WKR N LF
Sbjct:    1 MGAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGNRKRPAPKGATFGKPVNQGINQLKFQRSLRSTAEERVARRCGGLRILNSYWITKTVSTSTLKSSLSTPSTRLSVVMPVSTGSATPYTSAENLAVSHPLGKQNRGL-GRGSKHTKS--PNHAFWKRTNKLF 196          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.280e-37
Identity = 82/190 (43.16%), Postives = 110/190 (57.89%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            MG Y ++ E W+  +   +  L + R  ++R+ P +VRV RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L VLNSYW+ ED  YK+FEVI+VDP H  I++DP+I W+    HK R  RGLTSAG+K RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKKRMIKWRREPVVVRVERPTRLDRARSLGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGRKSRGLRNKGKGAEKVRPSVRA 188          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.280e-37
Identity = 82/190 (43.16%), Postives = 110/190 (57.89%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            MG Y ++ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L VLNSYW+ ED  YK+FEVI+VDP H  I++DP+I W+    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIKWRREPVVVRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWITGKAHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSVRA 188          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 83/194 (42.78%), Postives = 110/194 (56.70%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 636
            M  Y +V E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L VLNSYW+ +D   K++EVILVD  H +I++D   NWLC   HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGTEKVRPSVRANSKK 192          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 83/194 (42.78%), Postives = 110/194 (56.70%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 636
            M  Y +V E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L VLNSYW+ +D   K++EVILVD  H +I++D   NWLC   HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGAEKVRPSVRANSKK 192          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 83/190 (43.68%), Postives = 110/190 (57.89%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            MG Y ++ E W+  +   +  L + R  ++R+ PS+VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L VLNSYW+ ED  YK+FEVI+VDP H  I++DP+I W+    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKIRPSIRA 188          
The following BLAST results are available for this feature:
BLAST of FC875276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_CHICK5.414e-4761.2960S ribosomal protein L15 (Fragment) OS=Gallus gal... [more]
RL15_PIG2.877e-4058.3360S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15E_METJA8.371e-4044.3350S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15E_METM52.693e-3842.7850S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15_QUESU1.746e-3746.7360S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15E_THEON2.280e-3743.1650S ribosomal protein L15e OS=Thermococcus onnurin... [more]
RL15E_THEGJ2.280e-3743.1650S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_METM72.977e-3742.7850S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM62.977e-3742.7850S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_PYRHO5.079e-3743.6850S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionC31402B08EF CTVClemen1 Citrus clementina cDNA clone C31402B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875276 ID=FC875276; Name=FC875276; organism=Citrus clementina; type=EST; length=689bp
GAAAACCTAGTCGCACAGATACTGCGCAGCTCAGCTCAGCTCAGCTCAGA
GCCAATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTTTATCGTGTGCGGG
TAAGGCGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGT
AAACCCACAAACCAGGGTGTTACTCAACTGAAGTTTCAGCGCAGCAAGAG
GTCTGTTGCAGAGGAGCGTGCCGGTCGTAAGTTGGGAGGTCTTAGGGTTC
TCAATTCTTACTGGATCAATGAGGACTCCACTTATAAGTACTTTGAGGTG
ATCTTGGTTGATCCTGCTCATAATGCCATCCGAAATGACCCAAGAATTAA
TTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTGGTCTTACTT
CTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACACTTGCACCAC
AAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACATACTCTTTCC
CTCCGTCGCTACCGTTGATCATTGTTATGGTTTTGATGT
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