FC875283

Overview
NameFC875283
Unique NameFC875283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_PARUW (L-threonine 3-dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=tdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 79/198 (39.90%), Postives = 112/198 (56.57%), Query Frame = 1
Query:   82 LKIQPLELPS-LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            L ++ L +PS +   +VL++     +CG+DVH  K    A   V  P+VIGHE  G I + G  VK    G+RV  E  I C QC  C+ GR ++C  +KGLG   + GC A   V PA+  F LP ++S + GA+ +P    VH     N+  E +VLI G+GPIG++    A+  GA  IVI DV+DYRL +A+ +
Sbjct:   13 LWMENLPIPSHVKDDEVLIKTIKTSICGTDVHIYKWDAWAQKNVPVPLVIGHEFIGEIAEFGKNVKGFKIGERVCGEGHIVCNQCPNCRMGRKHVCMHTKGLGY-HISGCFAEYFVLPAENVFSLPPSISDDLGAIFDPYGNAVHTTLAFNLIGE-DVLITGAGPIGIMAAAIAKQAGARHIVITDVNDYRLDLARTM 208          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_CHRVO (L-threonine 3-dehydrogenase OS=Chromobacterium violaceum GN=tdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 70/197 (35.53%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   82 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            L++  + LP +G  D+L+++    +CG+D+H       +   +  PM +GHE  GV+  +GSEV+    G RV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   F +PD++S +  ++ +P    VH     N+  E +VLI G+GPIG++ +  A+  GA  +VI DV+DYRL +AK +
Sbjct:   13 LEMTDVPLPEVGHNDLLIKIVKTAICGTDIHIWNWDEWSQKTIPVPMHVGHEYVGVVAGMGSEVQGFKIGQRVSGEGHITCGYCRNCRAGRRHLCRNTTGVGVNR-EGAFAEYLVIPAFNAFPIPDDISDDLASIFDPFGNAVHTALSFNLVGE-DVLITGAGPIGIMAVAIAKHVGARHVVITDVNDYRLELAKKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_SHEAM (L-threonine 3-dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 68/189 (35.98%), Postives = 107/189 (56.61%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  A+ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +A+ +
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTTGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_BURXL (L-threonine 3-dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 71/197 (36.04%), Postives = 110/197 (55.84%), Query Frame = 1
Query:   82 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            L +  ++ P +G  DV++R+    +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P  +S +  A+ +P     H     N+  E +VLI G+GPIG++ +  A+  GA  +VI DV+DYRL +A+ +
Sbjct:   13 LTLTDVKKPEVGHNDVMIRITRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLVIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIMAVAIAKHVGARNVVITDVNDYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_BURPP (L-threonine 3-dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 71/197 (36.04%), Postives = 110/197 (55.84%), Query Frame = 1
Query:   82 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            L +  ++ P +G  DV++R+    +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P  +S +  A+ +P     H     N+  E +VLI G+GPIG++ +  A+  GA  +VI DV+DYRL +A+ +
Sbjct:   13 LTLTDVKKPEVGHNDVMIRITRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLVIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIMAVAIAKHVGARNVVITDVNDYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ALTMD (L-threonine 3-dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 68/196 (34.69%), Postives = 112/196 (57.14%), Query Frame = 1
Query:   88 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +Q    P +G  D+L++++   +CG+D+H       +   +  P+V+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+ GR +LC  ++G+G + P  G  A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +V+ D++ YRL +AK +
Sbjct:   15 LQDTPKPEVGHNDLLIKIRKTAICGTDMHIYNWDEWSQNTIPVPVVVGHEYVGEVVGMGQEVKGFEVGDRVSGEGHITCGHCRNCRAGRVHLCRNTEGVGVNRP--GAFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVVTDINPYRLELAKKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_SHESR (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-7) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 67/189 (35.45%), Postives = 107/189 (56.61%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +A+ +
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_SHESM (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 67/189 (35.45%), Postives = 107/189 (56.61%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +A+ +
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_SHESA (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 67/189 (35.45%), Postives = 107/189 (56.61%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +A+ +
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_SHEPC (L-threonine 3-dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 67/189 (35.45%), Postives = 107/189 (56.61%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +A+ +
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKM 207          
The following BLAST results are available for this feature:
BLAST of FC875283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
TDH_PARUW3.898e-2939.90L-threonine 3-dehydrogenase OS=Protochlamydia amoe... [more]
TDH_CHRVO3.898e-2935.53L-threonine 3-dehydrogenase OS=Chromobacterium vio... [more]
TDH_SHEAM5.090e-2935.98L-threonine 3-dehydrogenase OS=Shewanella amazonen... [more]
TDH_BURXL5.090e-2936.04L-threonine 3-dehydrogenase OS=Burkholderia xenovo... [more]
TDH_BURPP5.090e-2936.04L-threonine 3-dehydrogenase OS=Burkholderia phytof... [more]
TDH_ALTMD5.090e-2934.69L-threonine 3-dehydrogenase OS=Alteromonas macleod... [more]
TDH_SHESR6.648e-2935.45L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESM6.648e-2935.45L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESA6.648e-2935.45L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHEPC6.648e-2935.45L-threonine 3-dehydrogenase OS=Shewanella putrefac... [more]

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Properties
Property NameValue
Genbank descriptionC31402C03EF CTVClemen1 Citrus clementina cDNA clone C31402C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875283 ID=FC875283; Name=FC875283; organism=Citrus clementina; type=EST; length=689bp
GGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAA
CATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGG
AGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTT
GGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGA
TTTTGTAGTGAAAGAGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCA
TAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTG
GCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGG
TCGATACAATTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTC
ATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAG
CTGCCCGACAATGTCAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAG
TGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATG
TGCTTATCATGGGATCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCT
CGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCG
TTTATCTGTTGCAAAGAACTTGGTGCAGATAATATTGTT
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