FC875283

Overview
NameFC875283
Unique NameFC875283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_DEIRA (L-threonine 3-dehydrogenase OS=Deinococcus radiodurans GN=tdh PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 78/192 (40.62%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  100 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            E+P+ GP D+L+R++   +CG+DVH  K    A   V  PMV+GHE  GV+  +GSEV+    GDRV+ E  ++C  C  C+ GR +LC  ++G+G + P  G  A  +V PA   FKLPD++  +  A+ +P    VH     ++  E +VLI G+GPIG +    AR  GA  +VI DV+DYRL +A+ +
Sbjct:   19 EVPTPGPNDLLIRIRKGSICGTDVHIYKWDDWASQTVPVPMVVGHEYVGVVAGMGSEVRGFEIGDRVSGEGHVTCGHCRNCRAGRRHLCRNTQGVGVNRP--GSFAEYLVLPAFNAFKLPDDIPDDVAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGCMAAAVARHVGARNVVITDVNDYRLDLARQM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_DEIDV (L-threonine 3-dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=tdh PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 76/192 (39.58%), Postives = 114/192 (59.38%), Query Frame = 1
Query:  100 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            E+P  GP D+L+R+K   +CG+DVH  K    A   +  PMV+GHE  GV+  +GSEV+    GDRV+ E  ++C  C  C+ GR +LC  + G+G + P  G  A  +V PA   FKLPD++  +  A+ +P    VH     ++  E +VL+ G+GPIG++    AR  GA  +VI D++DYRL +A+ +
Sbjct:   19 EVPRPGPNDLLIRVKKGSICGTDVHIYKWDEWAQKTIPVPMVVGHEYVGVVAAMGSEVRGFNVGDRVSGEGHVTCGHCRNCRAGRRHLCRNTLGVGVNRP--GSFAEYLVLPAFNAFKLPDDIPDDVAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGVMAAAVARHVGARNVVITDINDYRLDLARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_PROMH (L-threonine 3-dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 78/210 (37.14%), Postives = 119/210 (56.67%), Query Frame = 1
Query:   64 LMGVNTLKIQP------LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +  ++ LK QP      + +P LG  DV+++++   +CG+DVH       +   +  PMV+GHE  G I  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+  E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA  +VI DV++YRL +AK +
Sbjct:    1 MKALSKLKAQPGIWMTDVPVPELGHNDVMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYIGEIVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNIPDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAICKHVGARHVVITDVNEYRLDLAKKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ECOLI (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12) GN=tdh PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 73/191 (38.22%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P LG  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  A+ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ECODH (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 73/191 (38.22%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P LG  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  A+ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ECOBW (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 73/191 (38.22%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P LG  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  A+ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ECO24 (L-threonine 3-dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 72/191 (37.70%), Postives = 114/191 (59.69%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P LG  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK  + GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFMIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_COLP3 (L-threonine 3-dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tdh PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 74/191 (38.74%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  100 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            E P LG  D+L+++K   +CG+D+H       A   V  PMV+GHE AG +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  A  +V PA   FKLPD +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI D+++YRL +A+ +
Sbjct:   19 EKPKLGHNDLLIKIKKTAICGTDIHIYNWDEWAQKTVPTPMVVGHEYAGEVVGIGQEVKGFTLGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRA-GSFAEYLVIPAYNAFKLPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDINEYRLDLARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_PHOLL (L-threonine 3-dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=tdh PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.431e-31
Identity = 72/189 (38.10%), Postives = 109/189 (57.67%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            P LG  DV+++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G     GC A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA  +VI DV++YRL +A+ +
Sbjct:   21 PELGHNDVMIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFKIGDRVSGEGHITCGYCRNCRGGRTHLCRNTIGVGVNRA-GCFAQYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.431e-31
Identity = 72/190 (37.89%), Postives = 113/190 (59.47%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRLS+A+ +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLSLARKM 207          
The following BLAST results are available for this feature:
BLAST of FC875283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
TDH_DEIRA1.691e-3240.63L-threonine 3-dehydrogenase OS=Deinococcus radiodu... [more]
TDH_DEIDV1.691e-3239.58L-threonine 3-dehydrogenase OS=Deinococcus deserti... [more]
TDH_PROMH4.919e-3237.14L-threonine 3-dehydrogenase OS=Proteus mirabilis (... [more]
TDH_ECOLI8.391e-3238.22L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECODH8.391e-3238.22L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOBW8.391e-3238.22L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECO248.391e-3237.70L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
TDH_COLP38.391e-3238.74L-threonine 3-dehydrogenase OS=Colwellia psychrery... [more]
TDH_PHOLL1.431e-3138.10L-threonine 3-dehydrogenase OS=Photorhabdus lumine... [more]
TDH_ENTS81.431e-3137.89L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]

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Properties
Property NameValue
Genbank descriptionC31402C03EF CTVClemen1 Citrus clementina cDNA clone C31402C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875283 ID=FC875283; Name=FC875283; organism=Citrus clementina; type=EST; length=689bp
GGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAA
CATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGG
AGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTT
GGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGA
TTTTGTAGTGAAAGAGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCA
TAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTG
GCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGG
TCGATACAATTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTC
ATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAG
CTGCCCGACAATGTCAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAG
TGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATG
TGCTTATCATGGGATCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCT
CGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCG
TTTATCTGTTGCAAAGAACTTGGTGCAGATAATATTGTT
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