FC875283

Overview
NameFC875283
Unique NameFC875283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ECO55 (L-threonine 3-dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 72/191 (37.70%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P LG  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ECO45 (L-threonine 3-dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 72/191 (37.70%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P LG  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ECO27 (L-threonine 3-dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 72/191 (37.70%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P LG  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ANADF (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tdh PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 70/191 (36.65%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P +G +DV +R++   +CG+DVH       +   +  PM++GHE  GV++ VG EV+   PGDRV+ E  ++C  C  C+ GR +LC  + G+G + P  G  A  VV PAD  +++PD++  E  A+ +P     H      +  E +VL+ G+GPIG++ +  AR  GA  +V+ DV+DYRL +A+ +
Sbjct:   21 VPEVGVHDVRIRVRKSAICGTDVHIYNWDEWSQRTIPVPMIVGHEYVGVVDAVGGEVEAFHPGDRVSGEGHVTCGFCRNCRAGRRHLCRHTIGVGVNRP--GSFAEYVVIPADNVYRIPDDIPDEVAAIFDPYGNATHTALSFELVGE-DVLVTGAGPIGVMAVSIARHVGARHVVVTDVNDYRLGLARRM 208          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_ANAD2 (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tdh PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 71/191 (37.17%), Postives = 114/191 (59.69%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P +G +DV++R+    +CG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C  C+ GR +LC  + G+G + P  G  A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ G+GPIG++    AR  GA  +V+ DV+DYRL +A+ +
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNRP--GSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGARHVVVTDVNDYRLDLARRM 208          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_VIBCM (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 70/192 (36.46%), Postives = 112/192 (58.33%), Query Frame = 1
Query:   97 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +++P LG  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     GC +  +V PA   FK+PD +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VDMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLARKM 209          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_VIBCH (L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=tdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 70/192 (36.46%), Postives = 112/192 (58.33%), Query Frame = 1
Query:   97 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +++P LG  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     GC +  +V PA   FK+PD +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VDMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLARKM 209          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_VIBC3 (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 70/192 (36.46%), Postives = 112/192 (58.33%), Query Frame = 1
Query:   97 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +++P LG  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     GC +  +V PA   FK+PD +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VDMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLARKM 209          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_SALTI (L-threonine 3-dehydrogenase OS=Salmonella typhi GN=tdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 71/190 (37.37%), Postives = 112/190 (58.95%), Query Frame = 1
Query:  106 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKM 207          
BLAST of FC875283 vs. ExPASy Swiss-Prot
Match: TDH_CITK8 (L-threonine 3-dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 71/191 (37.17%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  103 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKNL 672
            +P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +A+ +
Sbjct:   20 VPEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFRIGDRVSGEGHITCGHCRNCRGGRTHLCRNTLGVGVNRP--GCFAEYLVLPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM 207          
The following BLAST results are available for this feature:
BLAST of FC875283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
TDH_ECO551.869e-3137.70L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECO451.869e-3137.70L-threonine 3-dehydrogenase OS=Escherichia coli O4... [more]
TDH_ECO271.869e-3137.70L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
TDH_ANADF3.188e-3136.65L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ANAD23.188e-3137.17L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_VIBCM4.164e-3136.46L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_VIBCH4.164e-3136.46L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=... [more]
TDH_VIBC34.164e-3136.46L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_SALTI4.164e-3137.37L-threonine 3-dehydrogenase OS=Salmonella typhi GN... [more]
TDH_CITK84.164e-3137.17L-threonine 3-dehydrogenase OS=Citrobacter koseri ... [more]

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Properties
Property NameValue
Genbank descriptionC31402C03EF CTVClemen1 Citrus clementina cDNA clone C31402C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875283 ID=FC875283; Name=FC875283; organism=Citrus clementina; type=EST; length=689bp
GGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAA
CATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGG
AGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTT
GGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGA
TTTTGTAGTGAAAGAGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCA
TAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTG
GCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGG
TCGATACAATTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTC
ATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAG
CTGCCCGACAATGTCAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAG
TGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATG
TGCTTATCATGGGATCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCT
CGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCG
TTTATCTGTTGCAAAGAACTTGGTGCAGATAATATTGTT
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