FC875293

Overview
NameFC875293
Unique NameFC875293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:12..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 66/181 (36.46%), Postives = 103/181 (56.91%), Query Frame = 2
Query:  152 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPG-LVALLGSHSVGRTHCVKLVHRLY 688
            +FY  TCP   +II + +    +     A S LR  FHDC V+ CDAS+LLD++    +EK+    +   R F  I+ +K ++ER CP  VSCAD+L ++ +  V+  GGP+ P+  GRRD  ++  ++    LP    +++ + + FA +G++ P  LVAL G H+ GR  C  +  RLY
Sbjct:   34 DFYFRTCPSVFNIIGDIIVDELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANSARGFGVIDRMKTSLERACPRTVSCADVLTIASQISVLLSGGPWWPVPLGRRDSVEAFFDLANTALPSPFFTLAQLKKAFADVGLNRPSDLVALSGGHTFGRAQCQFVTPRLY 214          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 69/181 (38.12%), Postives = 100/181 (55.25%), Query Frame = 2
Query:  152 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLVHRLY 688
            +FY  TCP   DII   +    +     A S LR  FHDC V+ CDAS+LLD++    +EK+    +   R F  I+ +K A+ER CPG VSCADIL ++ +  V+  GGP+ P+  GRRD  ++   +    LP    +++ +   FA +G++    LVAL G H+ GR  C  +  RLY
Sbjct:   34 DFYFGTCPFVFDIIGNIIVDELQTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANSARGFNVIDRMKVALERACPGRVSCADILTIASQISVLLSGGPWWPVPLGRRDSVEAFFALANTALPSPFFNLTQLKTAFADVGLNRTSDLVALSGGHTFGRAQCQFVTPRLY 214          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  137 PGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMR--NFRYIENIKEAVERECPG-VVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRK--SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 649
            PGL  +FYK +CP+AE I+R  V+   +R    A   LR  FHDC VQ CDAS+LLD +     E++   +  +R   F+ I +I + + +EC G VVSC+D+L L+ RD VV  GGP   +  GRRD     ++ ++L   LP    ++  +L   + I +DA  LVAL G H++
Sbjct:   39 PGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSG-LPPPTAAVPALLAVLSKINLDATDLVALSGGHTI 213          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 68/184 (36.96%), Postives = 96/184 (52.17%), Query Frame = 2
Query:  143 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPG-LVALLGSHSVGRTHCVKLVHRLY 688
            L   FY +TCP    I+R+ +    +     A S LR  FHDC V  CDAS+LLD+T    +EK+    +   R F  I+ +K AVE  CP  VSCADIL ++ +  V   GGP   +  GRRD  ++   +    LP    ++  +   F  +G+D P  LVAL G H+ G+  C  ++ RLY
Sbjct:   31 LTPTFYDNTCPSVFTIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAAPNANSARGFPVIDRMKAAVETACPRTVSCADILTIAAQQAVNLAGGPSWRVPLGRRDSLQAFFALANTNLPAPFFTLPQLKASFQNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLY 214          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 65/187 (34.76%), Postives = 100/187 (53.48%), Query Frame = 2
Query:  134 DPGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLVHRLY 688
            D  L   FY ++CP   +I+R+ +    +     A S LR  FHDC V  CDAS+LLD+T    +EK+    +   R F  I+ +K AVE  CP  VSCAD+L ++ +  V   GGP   +  GRRD  ++  ++    LP    ++  + + F  +G++ +  LVAL G H+ G+  C  ++ RLY
Sbjct:   29 DAQLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 215          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 2
Query:  143 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGG--PYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 688
            L + FY   C   E+I+ + V   + +  + A + +R  FHDC    CDASLLLD +    SEK+   +  +R +  I++IK AVE+EC  VVSCADI+ L+ RD V    G      + TGR DG+ S A +++  LP    +++    +F    +    +V LLG H++G THC  ++ RLY
Sbjct:   28 LRLGFYSQNCQNVENIVSKVVGEAFIKDSSIAPAMIRLYFHDCFSNGCDASLLLDGSN---SEKKASPNLSVRGYEVIDDIKSAVEKECDRVVSCADIIALATRDLVTLASGGKTRYEIPTGRLDGKISSALLVD--LPSPKMTVAETAAKFDQRKLSLNDMVLLLGGHTIGVTHCSFIMDRLY 206          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER70_ARATH (Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 69/178 (38.76%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  155 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 688
            +Y   C   E I+R  V+  Y  +   A   LR  FHDC VQ CDAS+LL       SE+    +  +R F  IE  K  +E  CP  VSCADIL L+ RD V   GGP+ P+  GR DGR S A      LP   DS++V   RFA   ++   LV L   H++G   C+    R +
Sbjct:   38 YYGSACWNVESIVRSVVESNYLANPANAPGILRMHFHDCFVQGCDASVLLAGPN---SERTAIPNLSLRGFNVIEEAKTQLEIACPRTVSCADILALAARDFVHLAGGPWWPVPLGRLDGRISLAS--NVILPGPTDSVAVQKLRFAEKNLNTQDLVVLAAGHTIGTAGCIVFRDRFF 210          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER35_ARATH (Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 66/186 (35.48%), Postives = 98/186 (52.69%), Query Frame = 2
Query:  143 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRN--FRYIENIKEAVERE--CPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 688
            L   FY  TCP  E I+R  V+   K+      + LR  FHDC V  CDAS+++ ST K  +EK+   +  +    F  +   K+A++    C   VSCADIL L+ RD VVA GGP   ++ GR DG  S A  +E  LP  +D++  +   F    +    ++AL  +H++G  HC K+  R++
Sbjct:   27 LSRGFYSKTCPNVEQIVRNAVQKKIKKTFVAVPATLRLFFHDCFVNGCDASVMIQSTPKNKAEKDHPDNISLAGDGFDVVIQAKKALDSNPSCRNKVSCADILTLATRDVVVAAGGPSYEVELGRFDGLVSTASSVEGNLPGPSDNVDKLNALFTKNKLTQEDMIALSAAHTLGFAHCGKVFKRIH 212          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 65/186 (34.95%), Postives = 102/186 (54.84%), Query Frame = 2
Query:  143 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRN--FRYIENIKEAVER--ECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 688
            L  NFY ++CP  E I+++ V+   K+   T  + LR  FHDC V  CDAS+++ ST    +EK+   +  +    F  +   K+A++    C   VSCADIL L+ RD VVA  GP   ++ GR DG  S A  +   LP  N+ ++ + + FA   +    ++AL  +H++G  HC K+ +R+Y
Sbjct:   27 LKTNFYGNSCPNVEQIVKKVVQEKIKQTFVTIPATLRLFFHDCFVNGCDASVMIQSTPTNKAEKDHPDNISLAGDGFDVVIKAKKALDAIPSCKNKVSCADILALATRDVVVAAKGPSYAVELGRFDGLVSTAASVNGNLPGPNNKVTELNKLFAKNKLTQEDMIALSAAHTLGFAHCGKVFNRIY 212          
BLAST of FC875293 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 64/179 (35.75%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  155 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAI-GIDAPGLVALLGSHSVGRTHCVKLVHRLY 688
            FY  +CP+A   I+  V            S LR  FHDC VQ CDAS+LL      + +  +  +  +R F  I++IK  +E  C   VSCADIL ++ RD VVALGGP   +  GRRD   +        LP  N S + +   F    G++   +VAL G+H++G+  C     R+Y
Sbjct:   27 FYDTSCPRALATIKSGVMAAVTSDPRMGASLLRLHFHDCFVQGCDASVLLSG----MEQNAIPNAGSLRGFGVIDSIKTQIEAICKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANENEANTDLPGFNSSRAELEAAFLKKGGLNTVDMVALSGAHTIGQAQCSTFRARIY 201          
The following BLAST results are available for this feature:
BLAST of FC875293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER3_ARMRU9.295e-2636.46Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PER22_ARATH2.071e-2538.12Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER1_SORBI2.071e-2539.20Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER32_ARATH3.532e-2536.96Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER1A_ARMRU3.532e-2534.76Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER60_ARATH7.869e-2536.41Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER70_ARATH2.990e-2438.76Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=... [more]
PER35_ARATH3.905e-2435.48Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=... [more]
PER73_ARATH1.484e-2334.95Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]
PER1_HORVU1.641e-2235.75Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31402D01EF CTVClemen1 Citrus clementina cDNA clone C31402D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875293 ID=FC875293; Name=FC875293; organism=Citrus clementina; type=EST; length=700bp
GAAACCAAGGTTGGTCACCTTTAGTGAGTGAAGAGTAGAAGAGAAAATGG
GTACGAAAGCTGTCTTCTTGCTTTTAGCTTTGCTTTCCTTCTCAGCTGTG
TCTCTGAGGTCTGCTTTGGCAGAAAATGAAGAGGACCCAGGTCTTGTTAT
GAATTTTTACAAGGATACATGCCCTCAGGCCGAGGACATTATCAGGGAAC
AAGTTAAGCTTCTGTACAAGCGCCACAAGAACACTGCATTTTCTTGGCTT
AGAAACATTTTCCATGACTGTGCTGTCCAGTCTTGTGATGCTTCACTGCT
TCTGGACTCGACAAGAAAGACCTTGTCTGAGAAGGAGATGGACAGGAGCT
TTGGTATGAGGAACTTCAGGTACATTGAGAACATCAAAGAAGCTGTTGAA
AGAGAGTGCCCTGGTGTTGTTTCCTGTGCTGATATCCTTGTCCTGTCCGG
TAGAGATGGCGTTGTTGCGCTTGGAGGCCCTTACATTCCTCTCAAGACAG
GAAGAAGAGATGGTAGAAAAAGCAGAGCAGAGATACTTGAGCAGTATCTC
CCAGATCACAATGACAGCATGTCTGTTGTTCTTGAGAGGTTTGCAGCCAT
TGGCATTGACGCCCCTGGACTTGTTGCTCTGCTAGGATCTCACAGTGTTG
GCAGAACTCATTGTGTGAAGCTGGTGCACCGTCTGTACCCAGAAGTGACC
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