FC875296

Overview
NameFC875296
Unique NameFC875296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:173..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: REC14_SCHPO (Meiotic recombination protein rec14 OS=Schizosaccharomyces pombe GN=rec14 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 60/225 (26.67%), Postives = 95/225 (42.22%), Query Frame = 2
Query:   38 ENAHEESVWAVTWVPATETRPALLLTGSLDETVK---LGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            ENAH+  ++++  V         L + S D  +K   +G  +   +E  +T H LGV  +A      +  S      V V++ +TN    +      PSE W     P G T+A        + +WD              P   K ++  +  KF L + +SP+GR I SG   G + +      +  H L GH  PVRS+ +SP    +L +A D   + +YD
Sbjct:   12 ENAHQADIYSLNVVAGN------LWSASGDSKIKKWSIGDAEHSLVEEIDTPHKLGVHHLATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSV-DGRIAVWDN-------------PSDCKISELDTKGKFGLCIDYSPNGRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSVAFSP-GSTLLAAAGDSKMITIYD 215          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR69_XENTR (WD repeat-containing protein 69 OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 56/199 (28.14%), Postives = 92/199 (46.23%), Query Frame = 2
Query:   83 ATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            A   +  L+ TGS+D T KL      +   T +GH   ++S++ + +G    + S D  V V+++ +   I TL     E+   QF+   + +A A     S KLWD+     +ATL+    E             VL V +   G+ +A+ S DGT  V+  +  K L  LEGH   +  + ++    R+L ++SD T
Sbjct:  184 AFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDK-SCKLWDSLNGKCVATLTGHEDE-------------VLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILTASSDKT 368          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 55/220 (25.00%), Postives = 98/220 (44.55%), Query Frame = 2
Query:  107 LLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL----------------SIPRPEGLKPT----DKSSSKKF---------VLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            + TGS D+T KL   +  +   T  GH   +V ++ +P   + A+ S+D+  +++D+ +   + TL    +E+  + FD  G  + + G    +V +WD +T   + TL                S+     +  T    D +S K           +L   +   G+ IA+ S DGT  V++ T  K +  LEGH   +  + ++P   R+L  +SD T
Sbjct:  150 IATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRI-ITGSFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCITKLEGHEGEISKISFNPQGNRLLTGSSDKT 368          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 62/230 (26.96%), Postives = 107/230 (46.52%), Query Frame = 2
Query:   26 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCL-------GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 694
            ++ V + HE+ ++++ +          +++GS D T +L   +        TG C+       GV ++A  P+    A  SLD  +RV+ V +   +  LE     V+ + F P  + L ++G    ++K+W+      +  LS  +PEG+     +    FVLSVA SPD R   SGS D ++  +D+   +     +GH   V S+ +SP D R   S S D    ++
Sbjct:  394 VRYVFSGHEQDIYSLDF----SHNGRFIVSGSGDRTARLWDVE--------TGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLEGHKESVYSIAFSPDSSIL-LSGSLDKTIKVWELQATRSVG-LSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSP-DGRQFASGSGDLRARIW 607          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 56/191 (29.32%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  107 LLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            ++ GSL  +++L   +  ++ RT  GH   + S+  HP G   AS S+DS ++++DV     +   +     V  + F P G  LA A   S +VKLWD     +I             T+ +S    V  V + P+   +ASGS D T+ ++D+ +   +   EG    VRS++++P D   L+S S++T
Sbjct:   78 VVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDS-TVKLWDLIAGKMI-------------TEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNP-DGSCLYSGSENT 253          

HSP 2 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  206 VAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            V    SG + A+   D  V ++ V     I +L    S V  +QF+     + VAG  S S++LWD     ++ TL                K  + S+ + P G  +ASGS+D  I ++DV R   +   +GH   VR L +SP D + L SASDD+ V ++D
Sbjct:   27 VLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERV-VAGSLSGSLRLWDLEAAKILRTLM-------------GHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSP-DGKWLASASDDSTVKLWD 175          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 59/219 (26.94%), Postives = 102/219 (46.58%), Query Frame = 2
Query:   26 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV-YSPVDPRVLFSASDDT 679
            LK     H +S+ +V + P  +     L + S D+T+K+    D + ERT  GH  G+  +A      +  SAS D  ++++DV++   + TL+     V+ + F+P+ + L V+G    +V++WD  T      +             S+    V  V ++ DG  + SGS DGT+ ++D T  + L+ +        S V +SP    VL    D+T
Sbjct:   38 LKYTLKGHLKSISSVKFSPDGKW----LASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQ-SNLIVSGSFDENVRIWDVNTGECTKMI-------------SAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNT 238          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 2
Query:   35 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 679
            + NAH++S+  + + P        + +GS D ++K+ R D +  E+T  GH LG+   +      +  S S D  V+VFDV +   + TL+   + V+   F+P GT +A +G    ++++W     N I   SIP  E             V SV ++ DG  +ASGS DG + ++D T    +  L +    P+  + +SP    +L S  ++T
Sbjct:  102 IPNAHKKSISGIKFSPDGR----YMGSGSADCSIKIWRMDFVY-EKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIA-SGSFDETIRIWCARNGNTI--FSIPGHEDP-----------VSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNT 298          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 63/219 (28.77%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   26 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 679
            LK     H ++V AV + P  E     L + S D+ +K+    D + E+T +GH LG+  VA      +  S S D  ++V+++ T  S+ TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I S S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   64 LKFTLAGHTKAVSAVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 264          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR69_XENLA (WD repeat-containing protein 69 OS=Xenopus laevis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 54/192 (28.12%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  104 LLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            L+ TGS+D T KL      +   T +GH   ++S++ + +G    + S D  V V+++ +   I TL     E+   QF+   + +A A     S KLWD+     +ATL+    E             VL V +   G+ +A+ S DGT  V+  +  K L  LEGH   +  + ++    R++ ++SD T
Sbjct:  191 LIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDK-SCKLWDSLNGKCVATLTGHDDE-------------VLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRIVTASSDKT 368          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: TUP1_CANAL (Transcriptional repressor TUP1 OS=Candida albicans GN=TUP1 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 53/178 (29.78%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  167 ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLE-------GHFMPVRSLVYSPVDPRVLFSASDDT 679
            + T     L + SV   P G + A+ + D  +R++D+ T   I  L     +++ + F P G  L V+G G  SV++WD  T     TLSI              +  V +VA SPDG+ IA+GS+D T+ V+D T    +  L+       GH   V S+ +S    ++   + D T
Sbjct:  250 DNTTASGDLYIRSVCFSPDGKLLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRL-VSGSGDRSVRIWDLRTSQCSLTLSI--------------EDGVTTVAVSPDGKLIAAGSLDRTVRVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQIASGSLDRT 412          
The following BLAST results are available for this feature:
BLAST of FC875296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
REC14_SCHPO6.197e-1426.67Meiotic recombination protein rec14 OS=Schizosacch... [more]
WDR69_XENTR1.057e-1328.14WD repeat-containing protein 69 OS=Xenopus tropica... [more]
WDR69_RAT1.381e-1325.00WD repeat-containing protein 69 OS=Rattus norvegic... [more]
TUP11_SCHPO1.381e-1326.96Transcriptional repressor tup11 OS=Schizosaccharom... [more]
KTNB1_DANRE1.381e-1329.32Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
WDR5_DICDI2.355e-1326.94WD repeat-containing protein 5 homolog OS=Dictyost... [more]
YZLL_CAEEL4.017e-1328.24Uncharacterized WD repeat-containing protein K04G1... [more]
WDS_DROME4.017e-1328.77Protein will die slowly OS=Drosophila melanogaster... [more]
WDR69_XENLA5.246e-1328.13WD repeat-containing protein 69 OS=Xenopus laevis ... [more]
TUP1_CANAL5.246e-1329.78Transcriptional repressor TUP1 OS=Candida albicans... [more]

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Properties
Property NameValue
Genbank descriptionC31402D05EF CTVClemen1 Citrus clementina cDNA clone C31402D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875296 ID=FC875296; Name=FC875296; organism=Citrus clementina; type=EST; length=699bp
GACCAACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACG
AGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCG
GCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGGGGCGGCC
CGACGACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAG
TCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTC
GACAGCTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTAC
TCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGG
GTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGG
GACACAGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGA
AGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAG
TTGCATGGAGTCCTGATGGCAGACGAATTGCTTCTGGTTCAATGGATGGC
ACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGA
AGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCCCCTGTTGATCCAC
GTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCACATGTATGATGC
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