FC875296

Overview
NameFC875296
Unique NameFC875296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:173..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 62/219 (28.31%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   26 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 679
            LK     H ++V +V + P  E     L + S D+ +K+    D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I S S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 62/219 (28.31%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   26 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 679
            LK     H ++V +V + P  E     L + S D+ +K+    D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I S S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 62/219 (28.31%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   26 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 679
            LK     H ++V +V + P  E     L + S D+ +K+    D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I S S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 62/219 (28.31%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   26 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 679
            LK     H ++V +V + P  E     L + S D+ +K+    D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I S S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 62/219 (28.31%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   26 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 679
            LK     H ++V +V + P  E     L + S D+ +K+    D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I S S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 51/174 (29.31%), Postives = 81/174 (46.55%), Query Frame = 2
Query:  158 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 679
            + L +T  GH L V ++A HP+  I  +AS D   +++ +     I   E     V  + F P GT LA +GGG ++VK+WD      + T              +  K+ + SV +   G  +ASGS+D T+ ++D+   K    L GH   V  L + P    +  ++SD T
Sbjct:  316 LSLNKTFKGHLLSVANLALHPTKPILVTASDDKTWKMWHMPGGDLIMCGEGHKDWVAGVDFHPAGTCLA-SGGGDSAVKIWDFEKQRCVTTF-------------TDHKQAIWSVRFHHLGEVVASGSLDHTVRLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKT 475          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 53/198 (26.77%), Postives = 93/198 (46.97%), Query Frame = 2
Query:  104 LLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 697
            L++ GS   ++++   +  ++ RT  GH   V S+  HP G   AS SLD+ ++++DV     +   +     V  ++F P G  LA A     SVKLWD     ++A L             S  K  V  + + P+   +ASGS D T+  +D+ + + +   EG  +PVR++++S     +     D   V+ ++
Sbjct:   77 LIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASA-SDDHSVKLWDLTAGKMMAEL-------------SEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKDSLRVYGWE 260          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 51/178 (28.65%), Postives = 87/178 (48.88%), Query Frame = 2
Query:  104 LLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS 637
            L++ GS   ++++   +  ++ RT  GH   V S+  HP G   AS SLD+ ++++DV     +   +     V  ++F P G  LA A     SVKLWD     ++A L             S  K  V  + + P+   +ASGS D T+  +D+ + + +   EG  +PVR++++S
Sbjct:   77 LIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASA-SDDHSVKLWDLTAGKMMAEL-------------SEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFS 240          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   35 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAK 583
            + + HE+ V ++ + P+ E    ++++GS D T+K+   +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  + SG  D  I V+ ++ A+
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINV-ESPINQIAFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDAE 312          
BLAST of FC875296 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   35 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLGRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIASGSMDGTISVFDVTRAK 583
            + + HE+ V ++ + P+ E    ++++GS D T+K+   +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  + SG  D  I V+ ++ A+
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINV-ESPINQIAFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDAE 312          
The following BLAST results are available for this feature:
BLAST of FC875296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WDR5_XENTR6.852e-1328.31WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT6.852e-1328.31WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE6.852e-1328.31WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN6.852e-1328.31WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN6.852e-1328.31WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
PF20_CHLRE8.949e-1329.31Flagellar WD repeat-containing protein Pf20 OS=Chl... [more]
KTNB1_XENLA1.169e-1226.77Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_XENTR1.526e-1228.65Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
GBLP_LEIIN1.526e-1228.96Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH1.526e-1228.96Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionC31402D05EF CTVClemen1 Citrus clementina cDNA clone C31402D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875296 ID=FC875296; Name=FC875296; organism=Citrus clementina; type=EST; length=699bp
GACCAACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACG
AGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCG
GCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGGGGCGGCC
CGACGACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAG
TCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTC
GACAGCTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTAC
TCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGG
GTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGG
GACACAGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGA
AGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAG
TTGCATGGAGTCCTGATGGCAGACGAATTGCTTCTGGTTCAATGGATGGC
ACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGA
AGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCCCCTGTTGATCCAC
GTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCACATGTATGATGC
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